YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02998
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSENITPRV NDLLLENRDN RRRNGNALST KTITYSISIL VVILIMAIPI AYTLSEIVMY  60
   61 AYRNNETASK YIGIIINSIN VRALHAPKKA EDVDQPPSAK CNKRIVGYYT DWEPRKISAK 120
  121 QLQKLTHLIF TNVPMNSSGH VFFENLAQRR RFLEINRKAQ LMNVKVMFSI GGHKNAEHYS 180
  181 TVVADSTKRS VFIDSIVSFI KSNNASGVDL FWEWPNISEM NDFITTIKEL RKKLAALTKA 240
  241 QPKGTRYLLS IIVPSSPSDL EYYLRMDGLL HYVDFLNVLT YGYYAPWSGV NGKFVGPNAP 300
  301 LYGGNRENVD ETMQYLICKT RTPSKLNMAL SFYGRYWENV NDNVPDEMFK EADLINGKAQ 360
  361 GMFVAWKNLA GRGWDKSEAL WHEETQIPYI WNSEERKFFV FENERSLQAK MDYAADHNIG 420
  421 GVYIWALGAD DNNDTLLNVV SSADLCEGGS GNTLISLCG

Type	Start	End	Confidence
Cytoplasmic	1	31	0.91
Transmembrane Helix	32	53	0.90
Non-Cytoplasmic	54	459	0.96