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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7506734
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKQPMLSF AKVVSGQAED ASSPSQQVQH TQDSSHSSTQ NENSQPEKQA HPPHNRREKE  60
   61 NVGGRSERPR EEAEAAAAAA QKEQKSETAA DQFIITATPV VQKSSAPIPE KKRAVEPTPK 120
  121 QAAPIKEKSK SRESKKEPWK TSTAPAATAP VTETVTVAAT QDWPTLAKAE LNGHVSPSNS 180
  181 DDNNESSSNS QHKTGGKMTK NSWKKVDISV DYGSKGKGAP RGNGGEKGTR RSANDEAVRR 240
  241 RSGEEDSASG DEQQYWSRSK DNKSPINEMS SDRVVDSGSN GIYYQQGGTH GWKKKVNNKA 300
  301 GSDMPTPPNS TSPHQSESNS PEHLPKDKAP IMNGNAKNAP AANRNGNNTS TAKTGDYWHK 360
  361 NGGERKEDKS QPKAYYQRND RFQARANPHA PPKLTAAQRK ERGPLPRWED IEAGDDNFDY 420
  421 MTLMEAQYSQ YYGAPQQFEH QLDPHQASIL IQQAQQHMAS FAPFRPPMPM LSPHLMSPPL 480
  481 DRDGGVTSPV SNGEPINTAI PFAPIYNPPT APRPVTDDTL KEYVRKQIEY YFSEENLQKD 540
  541 FFLRRKMGPE GYLPVALIAS FPRVRSLTED YSLILEALKD STKVDMSPDG LQIRAPVNPT 600
  601 IWPLMPTVSG ADSLPGPSSQ APQQFRQNGP AATAAPVESQ PQASSSKPQQ PEEWEEFDNE 660
  661 ISGGGGSAQT PKRPEKSKKA FLSAIDSEEI GDDVISKLII MTPSRRTLDR TGDFSTRSQN 720
  721 QGEFNEEVEI GLRRYEEELW TVPQEKDIPT SKVSTISAEQ FNEMRGNEDA KKTSDEPPEI 780
  781 PLPSGTQPTP DSVWTKKAKE RAAASVTVPK SPMQRRESEE QKMNRFYPIS KPTAPLDAKS 840
  841 PRKKKTRHSE KPPVEMPVAW VLGREDALPA APIGIAASSS QVPANHPSIS LLQEDRFVQN 900
  901 VYSTWRQACL KQRKSLGYDC AEMNTLYRFW SFFLRDNFNR NMYEEFRKLA LEDAEIGSRY 960
  961 GIEALFRFYS YGLEKKFRPE IYKNFMKDVT TDVQKGELYG LEKLFAFLQR SKIAKQLVVD1020
 1021 DYLTKELNKY KSTDDFRNLP QSTKNQNVCL QNSQMALDLF RMRFPLISIV LLYMTASPTD1080
 1081 AFCFFLFANP QAFSFSEKKQ PETRMSQYFS RIKQIYLGII PIYPLGYIMV HGFRGDQIWA1140
 1141 KPYLNRSSLE PSESLKELVE HEMDKMEGLK KSKKLEFHVV LTDEMEPKTY GGLFLSSGAE1200
 1201 LQFPLRMTLD DVETARRIGA NLEVDLGLSK HRRKIEMNSE TGDEIISRLM LSDAAKMFVV1260
 1261 QRELQIANSG EYFCAPIFAW IGISSMSYGV LNGIAMMAGP YLATVAALTF TFAAFSQFSK1320
 1321 HFESFKTTRS DEDTVVRGDE YAIGDSWRRR RATNST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle