YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.74
Transmembrane Helix	36	54	0.79
Cytoplasmic	55	63	0.75
Transmembrane Helix	64	82	0.90
Non-Cytoplasmic	83	90	0.71
Transmembrane Helix	91	108	0.94
Cytoplasmic	109	121	0.74
Transmembrane Helix	122	142	0.92
Non-Cytoplasmic	143	153	0.81
Transmembrane Helix	154	176	0.89
Cytoplasmic	177	229	0.75
Transmembrane Helix	230	255	0.88
Non-Cytoplasmic	256	283	0.73
Transmembrane Helix	284	305	0.88
Cytoplasmic	306	315	0.79
Transmembrane Helix	316	339	0.76
Non-Cytoplasmic	340	347	0.75
Transmembrane Helix	348	372	0.86
Cytoplasmic	373	387	0.81
Transmembrane Helix	388	407	0.76
Non-Cytoplasmic	408	416	0.66
Transmembrane Helix	417	437	0.80
Cytoplasmic	438	684	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEGEWVQS APPEEIEEAK HLLDPVHVDF EHTHKPLAFV FLIILVTLAK PTLHWPVLRK  60
   61 LPESVVLMLY GVLMATAVKA LMRIDPGQLD TFMFFMILLP AIVNDAGLSM QKKEFTIALP 120
  121 KILLFAVVGT VVHALLLAAT MYGIEPIFSF KPGFLHLFVF ATLISAVDPV SVLSTFAELD 180
  181 VKKSLFILIF GESLCNDAVT IVLYRTSINV IKTSDASDEM LTITSVVGSC VVQFMIVCGF 240
  241 GLLCGAVVGF AGVFIMKNMV GHQMNQPIFQ LFCPYLAYLL AETGHYSGIL ASILCAAIMS 300
  301 YYMAANMCVE MEFAAFTFSK TGSSLSESCI FFYLGVSLVS YNHEFDFYFI AVTVFCCTLY 360
  361 RFLVTCTLSA FYNLFASEKN RIPFTDQLVV THAGIRGAVC FGLVQIIDER IIPAKPYFVT 420
  421 TTLAMIFVTS ILQGCTIKFV MKCLKIPGDD GTKQKDPKAL RWLTHLNDKY IKKFLVSENT 480
  481 YLPTDETFRN LGLPKAVSTA LRIGERSHTD LQRHGEVSHT PAPSVGRPTI APFDFGNMEE 540
  541 ENNRLPSTGR RTPVARSQTR YSRHFIYAIP NETDNYLTCP VSASKRPPFD PSQVYQHQNT 600
  601 ISNPGDDRAR CYNRRHNSMS GADEMELKQL NQTVQKKLSR TITSGTKQFV VNPDEAIREE 660
  661 SPATIPKKRA TFEDDEISKI DESE