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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pmp-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLSKLQLL NSTLTYKNWS PAFVGIFGCI TIAKIYSASF RNEGKGLSLS ETVGSGDVKK  60
   61 GKTKASLNAE FFAKLKKLLK ILIPGPFSSE VFYMIVIGFV LLARTIADVY MITNATSVEA 120
  121 SIVDRSPIMF AMSVFKYFLN LPAISLINAL LKFSLSELKL RFRENLTKYL YGKYLGGFTY 180
  181 YQISNLDSRI QNPDQLLTQD VEKFCDGIVE LYSNMTKPIL DVFLYVFKLG RALGWEGPGL 240
  241 LFGYLMASMV VLTKLRRPIA KLTVEEQVLE GEYRYVNSRL IMNSEEIAFY QGNKPEKQAL 300
  301 MGSFNNLVYH LRKTIMFRFT LGFVDNIVGK YITNIVGWVA CAKTFFDVNN EKFNEMDRNE 360
  361 LMQELYNNGR MMLKLSEALG RLALAGRDMT RLSGFTTRVD TLMKVLDDMK AGRFEKAQVA 420
  421 DESGEEGQRL MLKAGSGKLL AQDNMIKFDE VPLVTPNGDI LIESLSFEVP SGRNVLVCGP 480
  481 NGCGKSSLFR TLGELWPVMG GTLTKPAKGK LFYVPQRPYM TLGTLRDQVI YPDTSFDMKM 540
  541 KGMSDKDLEQ MLENVQLTNI LEREGGWSAV QDWMDVLSGG EKQRIAMARL FYHKPQFAIL 600
  601 DECTSAVSVD VEGAMYRLCR EMNITLFTVS HRKSLWKYHE YSLYMDGRGS YRFEQIDDQS 660
  661 DQFGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle