YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-20
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLVLFGAL LLIQTSEQMV QCRYTKNLTN RADGGDEHCL FYYLLNKEYE KSGSVHSLSA  60
   61 YPPNSDEMTI TIENVLVKYV ELVKGSSYQF NVFGDIYLNW KDERMKWDKK GEFENYEHLY 120
  121 IFNSSAIWTP HVIDHTLCSE GGCSYSVDDV DIYDDGTIYA RIQFKYLASC TVDYRKFPEE 180
  181 DDSCCIFFTA FEPNVEQTTL VLEGKEKEKM NRPVYAQKIY EKEKQLSDIV QEHSPWVVVE 240
  241 KTMSTSNLGG LKSLQVMQVC VRAEKQMSTV RVALLFPVTL ATYVMLASPL FGDLRTQIYV 300
  301 KLFSLHIQTL CFLYLCTITP LNGFLGVRPR IYIFYELIFT ISFMSILVTL VVMALSRVKR 360
  361 NVPPSHRLFL SAKLINRVVC CIEPERSDAY HRYVEEDTPE SRTTSEVSQQ QSVIRPGAEL 420
  421 DYTQDWRHIY LAMNNMFSAL MFSVFLFMTF LEFF

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	271	0.99
Transmembrane Helix	272	292	0.91
Cytoplasmic	293	301	0.83
Transmembrane Helix	302	324	0.86
Non-Cytoplasmic	325	332	0.77
Transmembrane Helix	333	355	0.90
Cytoplasmic	356	429	0.96
Transmembrane Helix	430	451	0.90
Non-Cytoplasmic	452	454	0.84