YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01805
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	51	0.95
Non-Cytoplasmic	52	80	0.93
Transmembrane Helix	81	103	0.91
Cytoplasmic	104	110	0.88
Transmembrane Helix	111	130	0.92
Non-Cytoplasmic	131	136	0.58
Transmembrane Helix	137	158	0.66
Cytoplasmic	159	167	0.58
Transmembrane Helix	168	192	0.82
Non-Cytoplasmic	193	201	0.63
Transmembrane Helix	202	222	0.94
Cytoplasmic	223	269	0.68
Transmembrane Helix	270	290	0.61
Non-Cytoplasmic	291	307	0.46
Transmembrane Helix	308	322	0.52
Cytoplasmic	323	336	0.81
Transmembrane Helix	337	355	0.97
Non-Cytoplasmic	356	361	0.77
Transmembrane Helix	362	383	0.90
Cytoplasmic	384	393	0.83
Transmembrane Helix	394	419	0.86
Non-Cytoplasmic	420	430	0.81
Transmembrane Helix	431	450	0.94
Cytoplasmic	451	464	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDYKQTDF ETGAEHLGNG RSWTCWGKTR FLILFIGLIC ITCTNANMIL MNFTVICMND  60
   61 VIIEQKSFSN QTHWLEKSSD ISLTFSAAAV GAIFGTVPAV TLISKYGIRK VLTVYGLLSA 120
  121 GGTLLMPLAV NYGLIPVLIA RLFQGVGASI LYSSIGTISE SWSPINEIGT FVAFLSSAFQ 180
  181 ISNIVTMPTA GFLCESSLGW KSIYYIFGGI TVIFYIIFLW YYNDTPNDHK NVSSTELRTI 240
  241 RDGKIFESSK HRPQNVKFTQ IFKNWEVFEI SLAIVGGSTS VICLNNYGPI YLNKVLGLNI 300
  301 RETGYSNAIP YFFAAIVKFA AGPVTDKLAH ISERTRLFIF ALIPQLVMAI GYLIMSFTDH 360
  361 VIIAQLAYTI SVILAGLNVI GMVKCAQIVA EKHLTLIMAV ISMSSWVSAF ILPIVIGVIC 420
  421 PTNSHAEWSR FYLFVAFFVV CTNLPFPFLA RVSKRTKVAP EIKF