YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01648
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.96
Transmembrane Helix	48	69	0.86
Non-Cytoplasmic	70	102	0.84
Transmembrane Helix	103	121	0.79
Cytoplasmic	122	127	0.78
Transmembrane Helix	128	149	0.90
Non-Cytoplasmic	150	156	0.76
Transmembrane Helix	157	179	0.85
Cytoplasmic	180	190	0.86
Transmembrane Helix	191	213	0.90
Non-Cytoplasmic	214	220	0.77
Transmembrane Helix	221	240	0.94
Cytoplasmic	241	284	0.95
Transmembrane Helix	285	305	0.91
Non-Cytoplasmic	306	324	0.89
Transmembrane Helix	325	345	0.90
Cytoplasmic	346	361	0.84
Transmembrane Helix	362	381	0.88
Non-Cytoplasmic	382	384	0.83
Transmembrane Helix	385	407	0.89
Cytoplasmic	408	416	0.79
Transmembrane Helix	417	438	0.90
Non-Cytoplasmic	439	450	0.76
Transmembrane Helix	451	471	0.95
Cytoplasmic	472	544	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNGSIRNCA NAVADTVRQT FSRKTWEHKE QLQTITEQKK FFLRKVRWQI AILAHFGFAI  60
   61 SFGIRSNFGV AKNRMVNNFT DAYGEVHERE FLWTGAEVGM MESSFFYGYA ASQIPAGVLA 120
  121 AKFAPNKIFM LGILVASFMN ILSAISFNFH PYTDIFVMVV QAVQGLALGV LYPAMHGVWK 180
  181 FWAPPLERSK LATTAFTGSS VGVMTGLPAS AYLVSHFSWS TPFYVFGVVG IIWSLIWMYV 240
  241 SSHSPETHGY ISDDEKKQVT EKIGDVAVKN MSLTTLPWRD MMTSSAVWAI IICTFCRSWG 300
  301 FFLLLGNQLT YMKDVLHIDI KNSGFISIFP QFGMCIVTLA TGQLCDYLRS SGKMSTEAVR 360
  361 KSVNTFGFTV EAMMLGCLAF VRDPVIAVTC LVIACTGSGS VLSGFNVNHF DIAPRYAPIL 420
  421 MGIANGLGAV AGVGGMVTNT VTYQNPDGWK WVFLLAMAID IFGVIFFLIF AKGDVLPWAR 480
  481 EPEKEETFNE FVRRMSIKVR SLSRKTRNRE GDTSYEKMEE DSEMKPCSKK VEARAPAEKS 540
  541 ESSS