YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rnf-121
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFSYFISIF TANLSPTFPC RKVNQLNYFY QLLNLKCFFR SIFKIGHFPR GSPLYLLEKS  60
   61 ITFSKIISIF SGHRMGQHGA IRLQNEVQEG MPPPHELTEE EQWAEEHRKM HEKHKGHEAM 120
  121 HMEMMVIFMI SVIVGQIFLV TWKRKHFKSY QMCTLIGMLT IPVYVCFNRS WYRFLATWLV 180
  181 FCIFSAFIWL KASAQHISGG TPRFVYKWFL FLHKLSYVLG VVGYLIMMGA LLGFHVLFGV 240
  241 SQPTLMDAGI LFMFYGVYYG VLGRDFAHIC TARMASRIGY YTPEGLPKKH LEDGVCAVCG 300
  301 GRLDDSEHVH DADAVVTTKM VEDEDEKLYK LSCGHVFHEF CIRGWVVVGK LQTCPYCKER 360
  361 VDLQRMFKNP WEKPHLFYGK LLDWIRYLVC WQPLIVTAVQ GLTTWMGLE

Type	Start	End	Confidence
Cytoplasmic	1	54	0.59
Transmembrane Helix	55	69	0.17
Non-Cytoplasmic	70	118	0.59
Transmembrane Helix	119	140	0.87
Cytoplasmic	141	148	0.51
Transmembrane Helix	149	167	0.71
Non-Cytoplasmic	168	173	0.71
Transmembrane Helix	174	194	0.91
Cytoplasmic	195	214	0.78
Transmembrane Helix	215	237	0.90
Non-Cytoplasmic	238	244	0.73
Transmembrane Helix	245	267	0.78
Cytoplasmic	268	386	0.94
Transmembrane Helix	387	406	0.67
Non-Cytoplasmic	407	409	0.59