YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tbx-2
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNPFALGR PDLLLPFMGA GVGGPGAGGP PPNLFFSMLQ AGFPPGPVGS PPEDDGVTDD  60
   61 PKVELDEREL WQQFSQCGTE MVITKSGRRI FPAYRVKISG LDKKSQYFVM MDLVPADEHR 120
  121 YKFNNSRWMI AGKADPEMPK TLYIHPDSPS TGEHWMSKGA NFHKLKLTNN ISDKHGYTIL 180
  181 NSMHKYQPRL HVVRCADRHN LMYSTFRTFV FRETEFIAVT AYQNEKVTEL KIENNPFAKG 240
  241 FRDAGAGKRE KKRQLHRMNG DATQSPPGKT ASLPTHSPHP SESNSEDDEP TLKKCKPEPS 300
  301 QTPTTSSLST STTPTLSAHH PLRSPQFCIP PPIDMMYQNM PMDLLAHWQM ATLFPQFSMA 360
  361 LNSPAAAASL LSKHLAKASS ECKVEATSED SEEAEKPEVK KEQKSVTPPK KGGFDVLDLL 420
  421 SKP

Type	Start	End	Confidence
Cytoplasmic	1	12	0.43
Transmembrane Helix	13	29	0.49
Non-Cytoplasmic	30	423	0.97