YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01112
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSISTAGA VVDDFQMSCR FSNFGDHAPE SFDSLSCGAC FYFIFMLVEH YKDRYVASLC  60
   61 EDTFGVLVCP VDVSDKICNC YNREYVYNIP EFALNSSRIK PLNHLRLDPP LPFQFDLIVK 120
  121 DCCSAARYCC RNTLVKYHHR VDDSPCPPTW DGWNCFDSAT PGVVFKQCPN YIYGGSNIKT 180
  181 DYDRLSQKVC RSNGWATPEV NAAAREHTDY TGCMSNGDVE ARILAGLLTY SASVIFLIPA 240
  241 VFLLTLLRPI RCQPMFILHR HLLISCLLYG AFYLITVSLF VVNDAPLSSQ VFQNHLFCRL 300
  301 LFSIQLRYLR LTNFTWMLAE AVYLWRLLHT AQHSEGETLR SYKVICWGVP GVITVVYIFV 360
  361 RSLNDDVGMC WIENSTVAWI EWMIITPSLL AMGVNLLLLG LIVYILVKKL RCDPHLERIQ 420
  421 YRKAVRGALM LIPVFGVQQL LTIYRFSNTY YQVTDQSLNG LQGMFVSFIV CYTNRSVVEC 480
  481 VLKFWSSHQE KRALGAECRQ RMSIQESGKL ILRPPQTEHV VL

Type	Start	End	Confidence
Non-Cytoplasmic	1	224	0.96
Transmembrane Helix	225	247	0.90
Cytoplasmic	248	260	0.80
Transmembrane Helix	261	282	0.89
Non-Cytoplasmic	283	308	0.83
Transmembrane Helix	309	328	0.81
Cytoplasmic	329	340	0.90
Transmembrane Helix	341	361	0.89
Non-Cytoplasmic	362	383	0.90
Transmembrane Helix	384	407	0.92
Cytoplasmic	408	423	0.97
Transmembrane Helix	424	444	0.87
Non-Cytoplasmic	445	462	0.79
Transmembrane Helix	463	478	0.62
Cytoplasmic	479	522	0.66