YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	eat-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.93
Transmembrane Helix	70	91	0.87
Non-Cytoplasmic	92	124	0.82
Transmembrane Helix	125	143	0.75
Cytoplasmic	144	149	0.80
Transmembrane Helix	150	169	0.94
Non-Cytoplasmic	170	176	0.80
Transmembrane Helix	177	199	0.83
Cytoplasmic	200	210	0.87
Transmembrane Helix	211	234	0.87
Non-Cytoplasmic	235	241	0.73
Transmembrane Helix	242	261	0.95
Cytoplasmic	262	303	0.94
Transmembrane Helix	304	323	0.87
Non-Cytoplasmic	324	344	0.86
Transmembrane Helix	345	365	0.90
Cytoplasmic	366	381	0.81
Transmembrane Helix	382	400	0.95
Non-Cytoplasmic	401	406	0.77
Transmembrane Helix	407	427	0.94
Cytoplasmic	428	436	0.78
Transmembrane Helix	437	459	0.88
Non-Cytoplasmic	460	469	0.77
Transmembrane Helix	470	491	0.92
Cytoplasmic	492	576	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWNEAWDR GKQMVGEPLA KMTAAAASAT GAAPPQQMQE EGNENPMQMH SNKVLQVMEQ  60
   61 TWIGKCRKRW LLAILANMGF MISFGIRCNF GAAKTHMYKN YTDPYGKVHM HEFNWTIDEL 120
  121 SVMESSYFYG YLVTQIPAGF LAAKFPPNKL FGFGIGVGAF LNILLPYGFK VKSDYLVAFI 180
  181 QITQGLVQGV CYPAMHGVWR YWAPPMERSK LATTAFTGSY AGAVLGLPLS AFLVSYVSWA 240
  241 APFYLYGVCG VIWAILWFCV TFEKPAFHPT ISQEEKIFIE DAIGHVSNTH PTIRSIPWKA 300
  301 IVTSKPVWAI IVANFARSWT FYLLLQNQLT YMKEALGMKI ADSGLLAAIP HLVMGCVVLM 360
  361 GGQLADYLRS NKILSTTAVR KIFNCGGFGG EAAFMLIVAY TTSDTTAIMA LIAAVGMSGF 420
  421 AISGFNVNHL DIAPRYAAIL MGFSNGIGTL AGLTCPFVTE AFTAHSKHGW TSVFLLASLI 480
  481 HFTGVTFYAV YASGELQEWA EPKEEEEWSN KELVNKTGIN GTGYGAAETT FTQLPAGVDS 540
  541 SYQAQAAPAP GTNPFASAWD EHGSSGVVEN PHYQQW