YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01081
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWLPGLLLI ASIGFHQSLA DRVLVLGETA AVKDTHSVFL NSVKERGHEL TVRAADDSQL  60
   61 ALFKHGQLIF DHLFILAPGV QVFGGSLSPS EISKFVDAGG NVLVAAGSNI GDALREIAAE 120
  121 HGFEFEEAGT SVIDHHNYDQ TLDSGDHTTL VVGKDQLISA ELIVGNSAKL HPVLFKGIGL 180
  181 VAGKTNNLAL SIVRASGTAY SYDPKAVRAT NPSIAGSRTL LVGGLQSRNN ARIVFTGSSE 240
  241 LFSNTFFSAK TNSVNPSVQG AQSGNADFAT AITRWVMKES GVLRVKTVNH HKKGETVPPV 300
  301 EGYFITEDVV YTIEIEELKN GKWVPFQGKD VQLEFVRIDP FVRATLKNSN GRLSVAFKLP 360
  361 DVLGVFKFLV DYRRVGYTHL YDVQQVSVRP LWHTQYERFI RSAYPYYASS FSMMAGLVLF 420
  421 SIVYLYHKDT PVKGAKVLDS EKKKN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	403	0.99
Transmembrane Helix	404	426	0.87
Cytoplasmic	427	445	0.90