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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptr-8
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHKNETSRV TRIWNSLSYK IGSTVARYPV ITIIFCLVLS AVMSIKLALT PKVSAIDGYA  60
   61 SDDSMSRHEF KTFQQFLDSD GPGITTAILI RSSITNGSLL EEQRLKEVVK VSDFISTNFK 120
  121 LNVSGVEKNF NQFCRGFCQA NEPVRQYYNG LQILGKNQTD GISKRIDLSY PTSNFFGRKF 180
  181 SLIPNFFGIS MSPEGQHLNS SNLIVLYFRA ERYPDWSTKT VKQWELRVRD HFAKEYSSDL 240
  241 IIVDVMSQTV VESEIVRAGL SLQPFLIVGF VIMSIFCTVT TMFSAVYLYS QKATFNKVAL 300
  301 SIIACINPFM ACGTAMGILF FCGVTFSPIM CITPFLVLAI SVDDSFLMLH AWNRLESWRT 360
  361 APLDKPMREH MMGEVLVETG PAISISAFTN MLAFTIGAIT SPPEIRIFCF GNAAAIFMDM 420
  421 FYQATFYTAC MTLLGDTKNS EGVSEKTKRI QERMGNVVGR FLKWYVNAIS NIFVSFGIVL 480
  481 VWAVFIGFAV LGLTRLHVEL RPSKFFLKDS PMLYMDRLRT NEVVPYYTPV HVIVNNPGDL 540
  541 TNDSNVERLV ELKEKLEHMP NAIGAPSTKF FLDDFVQYRS SFAEEIEMDI AEDDSESEKS 600
  601 DIEQFLEWPE FSFWRGFLRF DNQTHPHNVT KFMFTTGFHG QDLKDWNKRG QLLKRWRGAV 660
  661 EEFKDDFNTT VFTEDAFFLD MIDSIPTVTW QTTLATFIFV SLVCFLFISD ILTVMIVSVA 720
  721 TLVTSVGVFG YLSLLGVTLD PVIMSIAIMC IGFSVDIPAH VAFHFYAAKA KKHASSHSQP 780
  781 SPHQVTSPDI VHSTSTTSSS DSSISTPNSF ETNLNFALSS VGFPVIQAGV STDFCALPLG 840
  841 FMELYMAKMF ALSLTLCVSL SLIHGLIVIP ALLSVQHHIV HAVKRCFGRN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle