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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25395866
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISRRSYEQ FDEMKSENQE NNSKKKSSER LKKLDPDKFV EAYGAYGKYQ IFTYVLVQTL  60
   61 NFFYSSSMYI MSFVQLNLEK QCEYKNETIP ISETCQIETE SSKAFGNLNG EYCGIAENTL 120
  121 VNVTNQKAST NLLVDFDLSC SHWFFQEFGL TIFTIGAVIA VPFMSMLADR YGRKPIIVTT 180
  181 AILAFLANMA ASFSPNFAIF LILRAFIGAC SDSYLSVASV ATCEYLSEKA RAWITVVYNV 240
  241 AWSLGMVWTL LVTLMTDDWR WRYFIVSLPG VYGFALWYFL PESPHWLITK NKTEKLKKYI 300
  301 KTANRMVISL VYFAISFMSV ELGGDQVQAF LYSSLIEIPA GLAVIPLMMK MGRKMIVIWC 360
  361 LVFQTLALIG VTVFLDSYEF KLVIMLVAKV MATIIYSVHP IWATEQFPTS VRSLCFSLMN 420
  421 IPQSMGIIMS PYVKHIVMSP NWIPFVVIAL FSFISATLAF MLHETKNKKL PTDIESLSYP 480
  481 SETNDLSAYR RSKSSSSSVS ALSKTSVRSK KTLSSESVSK KLDTKNERTE MPNSRYDKYH 540
  541 GTYSTPQNCN PFFRRHSVLT QRMLFIVNQH PRFYTEFLNS IYFQNDCCNN YNLAMTIHHH 600
  601 GSAERKSIDD YSDIPRGEAC KQLVEQLNRN LYSLNSNMQT TFKQMVHVET RIGHEISLLS 660
  661 SCLQENMSKC TMPYAPHEEQ LVQLDSAKRN LKQLTRLLDA RQIFDAEDSQ SEKLKDRAID 720
  721 DSLLPTLVAI GDNLKIIKEL GAKPKFDAET YHKTKDRYLA WKGTEFAVKF DTPGGLDDIF 780
  781 DAFTTLNSVN DFYRLYQHHF DQSLNNLNKN SGIEDEKSLK EMGTVFVTKA AEHFRTHIGY 840
  841 SLCKYCDENE AFTRLLDAWK NYIKNGTLEK LFEQSMENYN NYDLLSDLKS VVTKAYEEFE 900
  901 TNTAGGPEDD EESIENIERI IVDGLMESAK KPLSEKLRSM VEPPPLNFRS VAEVMSSLEN 960
  961 FAYLLREISH QLLEIYLEDE GREFMISILK PIFTDYTMRL CRMEDNSTPK VKLEEYLERI1020
 1021 ALAGQLSTIV EEYKDQTEIK NGLELKNAKK WMNERVKDAI RASHRFVTDK MPNHGSETYK1080
 1081 ESADMAKSAL PTPQDFVVTA TQNLLHLLRF WEEALANENT KVALIAHVMD INKESLETPD1140
 1141 DDAIFAAILD RIASHVVKKL LQSINDVWLT DGKTATLSKG LVKEFLCDAE YLRDALVDLR1200
 1201 AGTHDNLDST INKLREQLKT MS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle