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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: mnp-1
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPPASPSK KAKSSWLLIA LIAVIIGIIL CAGVITFLTL FNKNGDGPDM DWQNATEVPL  60
   61 TTTSKATVST TTTQSATTPS TTTTRIEETT TTTSGAFDES VKNSEASTST IPTTEAVPTT 120
  121 TATDAPEIVM PVDVASILKD KTKDFEIVEK CAEIQALPVS CTPSQSPLTS DPSKFQPIHY 180
  181 VLNITIRDVR KPVLEGHMQL FASTKDQVQA ISLHSVKIHN LENRDRIHVV NCNTGETICV 240
  241 SRVHQIDDLI HLELAQSISS GVNLRVDIDG FISADSGPHV FKQIPTAKWR VPQMIGSVFE 300
  301 PTSARHVFPS FDLHNQKSTF NLCLNHGPSM SAIANSLINP NVSTSGISCF EKTVPLIAQQ 360
  361 LSFVAFEKTN PLFYNTTTMD GAYLPEIDMI FNLNAKNFKQ YEWIHSEVSK VMALMSKWSG 420
  421 FSYPLTRLEI VVAPVQAGHS ALGVITLPAQ AIAYQKHTST HETLIKEVIG QWMEGVVTTE 480
  481 HTCFEKALIA YVEWKINEEL QIVKKTRKME VSKIRPRNLN ETADSVRVLR QIKSQSSNLC 540
  541 SPRFVEVFYT LDETYGQETV IGMIRVIFDK FAFSTATISD WASAAETATG GRPEAGALIH 600
  601 QWYRPSSTIS RPVLRAVVSS NSVEFNQLTE ETWTVPLEIS GSAGTQLAVI SEKKQAIPFV 660
  661 SSDYVVVDAG RKSHAFVVYD ADTYLRLIRC FGDSRCPSKE IGGIFSDLGA ALLANILPKP 720
  721 ENQDVAKWKS VFKFMAQQNI VEGTAACCVE HAIREMRKCS YWDIQDVCTK IDFNIVLAAV 780
  781 A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle