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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPAC3H5.09c
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSSSQNTSF VWVVIATGFL FHLVLFVLSY VLGWPFTNFG FFSVYGLRHT FRNGDSVFIS  60
   61 YVALRLHRPS TSKPYLLRIV TKGLIYTPSL SSANDAQSAG KNENQRSRLV FKAKREEEKT 120
  121 EEKFCHAVYM SNLLRNVEQK WIQFLHKSWM KWLHISIQES QLTFPSVGTF ELGSLSMEMR 180
  181 PETNNVVGYE NPSDPELVSS CVICSIRLAN LVYIDRRQSS QQITDYLDLS LQTYYSLDKS 240
  241 NVPDTILRLR SSIKVGVLYI DLDTPLFEHL LNSNSSGGNH SSSSSSSGKV HVMKDNVEAA 300
  301 LLKLQEAQIQ IGTLKLWKRN VTGCGATYIL NGSDFGLNLI LLNKKNPSHR MFFPVEACVH 360
  361 QILASALSFN VESITPGHSP HVLLNIPLVT ITCLTSALAE YARDASDLHQ LQNSILRVNS 420
  421 TLTSPSLDLR LELLHDVLSC FPKKHDSTSR KKPKFPYQYF PYMKFSVSLY EPALRFLIAS 480
  481 KSDSDFPGML VANLSSMFLD IKYSPSSEHI FEIESSLRLS SNKVFYHNPK NKKWLINTSD 540
  541 LITFSLGYIC NNDHGSLNMF FRDFQIRIEE EEVINSLKKF IILTKIKSEQ VGPRKPRTKL 600
  601 VEPLLFRIPK WLKHIQLEVH SLLLVITAIR PEISPEPRGI NCSIDKIHSL YLNDKKSRSQ 660
  661 GMRKFDLNLE LLMIKSIIFK NGKSLNSHLF LQIPNINFIV STILRDNTAI SRFTTEINFL 720
  721 RCFASLLHNC CIFYAYRACS SLFGENKSHK RIEKTNTSPQ EPGVVPEGWN FDFRLKNARV 780
  781 SIFLDDDVSL LLDCGGFTTL KKTEKKYAEM HAKFIQIHTK NSDVPTLWDR FLALGNVRYQ 840
  841 LKDLSDLEKL HQVTCSYISI RIPHKFIPFI LIESAINTVK AAIRVSAEPL TIDQQHDLAE 900
  901 EIKQPRVVPH IQIKSTKFKF EVDDDPFECR LGMNYRIGLT EQQMRIDRWN IFEERANLLR 960
  961 KAKDPSPKSA SESSSFYQNG SDIDDNDSNS SNTSNHTTEN ANAQQRKLED LNRSFEDFLG1020
 1021 SRPTNNSSFL KNVSVDEDTA REKLMEYDSL SWISNIKRIR EFRYHRLRIR RMTAWPESDA1080
 1081 LDKHILFKEN IIPIPIRPPL VDISLLNFDF TLDKPSFPLE ELPKFLNTVG RGQPLDYGYS1140
 1141 IYFPMYIDWK MDEAKFLIRD YPLPLVYIPK LGRGQDKRIS SWHLKSNMVI TEQQATLAAI1200
 1201 RDVSVKVIPA DLTKEGIPYV VNVTRTVSPI KTFSKTEIDV NSSLPTFLLW CNSYQPALSD1260
 1261 MTRIMDTFTK MPIDPSEKLG FWDKIRLVAH SQIRLRWLED GDVFLSLKGS RDPYVILGEG1320
 1321 AGFQFCWSGN VSWDIGCDEN PANFMIVDSD KFYLTIPDFP RQINGILEGK PLPTKSTKRS1380
 1381 YTTFGVLKDL RCRKVIAKLV GKVRWRAGFV PERHCDEDCT VCNRKKACRL WNFKPHWQVI1440
 1441 TRIPQYCHDT HYGVYDAYRD FRSHYIHCSL ALESPRYLDD ANAFENVNSY NTIHLTPLVF1500
 1501 SHFSSWWNLF SNNMSYPLRS GNLFPTLDSS PNKKFGRHLA TFKYALELTP LFISHMYNYK1560
 1561 TNKNWQDRTA SATGLKARVD NFTIDLHQRS EKHEVKNKAN LGRKHQEATS MKVHLAEIDF1620
 1621 KTIDLRAISA SFDEGALDNS DSIPANVLDE EEKECFSFKN VDGPANWVDI DDYHEADWLL1680
 1681 PQQNEKCSIY PLAFSPRFTY YRHTKCHRRN EKNEKEIIPD TCRFGDEFTH RCLMPSRENP1740
 1741 KAVQYELLQK RRKELEEFMS SEQERIGFLK SQLESNNDSE EVRQEYEELT KRIVTLSDHY1800
 1801 RLLEYLLKDE SSCSQASQCS ENGQVDLSYA SLSESVHAFN NRFVAHNVQV KWNNFIRNAV1860
 1861 MSYVHEVERV RGFAYYMSQK AIVFLRDLEK RTESANDDFF GNYTEDDEDR ENARHLLKFL1920
 1921 LEDSKKRFWV KTSDADREHG SEEGNTNSIS NNEYDIIQSY VFRFISPQIQ LQCSSNPEKA1980
 1981 VIISIQSLQI KILSVVDPIF PDNDINYLIE RRFLCKVNES QFFISKKSDF EVVNASSLVL2040
 2041 NEYGCEHNTV WPPWVPFETT FDFVLTPAAF SRFLHRVSFS VIYTKHNDLR LQETVHSTRA2100
 2101 FFEDLDTHAD TLTFDFPRVV FSTDSSQYYD IFTIITDLLL YKEPAQKQRN QRLEEIMLAA2160
 2161 DFSDLTGTSE VVRALQARVH RLLDLKLQHQ LYDVTFGIYA HIAQQLFLQN ELHRCGEELY2220
 2221 YLIESIAAVQ NRGIHQNKVR SNLSWFLMAK EVVWHLLEDN KKPFLDVRLQ NATFRRIENS2280
 2281 DASNFNTLEI EFMKGSNLAP GCQFENIICP YFNHEFSNEQ LLQQKFIRIH WEVLEAVAGI2340
 2341 QVIQHFEINL FPLSLQIEQE LATKLFAYAF PNRNESDGFP HIYSRNHDKR KENGSQGEAD2400
 2401 NSNYSGSLMR RRTNDQEEDA LATPSSSRRD SRSKRASLID FTIDKCLDVD DEGRMELQSM2460
 2461 LDRAGSNMLI TYFKIPSVVL RLSYRGTGGL GLENITGFVF TVPTMEYRNE VCSYLDLAMK2520
 2521 LKHDLIRTVV SHTGKLLVEK VKGNYHLKEH EREVSSELLN LQQLSAEHNR HADLESMVMA2580
 2581 RDDYINVQQP LAEENQEEGS PASAISRNHS TRSSLNSPRQ FWAYHGSRSK KIADIVKRHI2640
 2641 PPTINGKRSK NKGNEGSNAR VDFYNDERYD PVKRELILGA SNRRK

YRC Informatics Platform - Version 3.0
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