YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC21B10.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVDTQLSRD GLYSSLRTRY KVYISMHAFA IWHRFISFLA IYLWPCIMGS VNLNLQDREN  60
   61 EYFFDSIQYI IYTSELLVGD HELQRSHHEE QPSLVYPSSS FSSTSKFWRY FAYLLSLQIV 120
  121 IDFVLYKLSS AMASLHYLKF VKIIALSYIC FSSLIRICHC WTYFIRIMGL SSLNKFVNLL 180
  181 HDFETTSNRV YSQICELEAN SAANRSRLMD FLPANDPLLF NLTEQNTLSY ELSGLYEKLL 240
  241 PRYQLVLSRI YPYAAASNLR NLLSLYRLPN CFGKLNSFDL RKGSSTSLKR SSMYLARKEN 300
  301 QDFDDQSTQI LNHIKTAYYE LTIISKQVLC CILSFPVDSF LAERSSWLIV HREVGDLSNA 360
  361 LSVSMVRLVD ILKFSVESVN RNQHNTTSKP FPRIMCKENL RSLFNELHSV MMETHESISS 420
  421 YIQEGDNTAM QTYAMDEYDQ VGLLLKDLLS EWDFNRALLL NLQHMHRKRK

Type	Start	End	Confidence
Cytoplasmic	1	22	0.90
Transmembrane Helix	23	46	0.76
Non-Cytoplasmic	47	106	0.88
Transmembrane Helix	107	128	0.84
Cytoplasmic	129	142	0.74
Transmembrane Helix	143	165	0.85
Non-Cytoplasmic	166	470	0.90