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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPCC1840.08c
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGAWRSIL YIAFLFAITR HAFCKAVNLV HSPEGEEFEN ILSSVSATVE KKEVNNKLIM  60
   61 PTANRDNQGV REELLVSSFK ERKLLNTNSA NLRLNSIGSY EMIDFKQINS EFFLSHRQHG 120
  121 FVLFIDSKKK PRQSFYTDSA TSIVQLSKKY RNKIKFKSVD CASSLEKCEE IGINSFPSLV 180
  181 YYNNAGQKKV FTAHTPYEVL SKHADLITEL DETDGKVYPQ SIIRLEEFKN LKANEPVFFL 240
  241 YLHDYGSTPE DFDSLRIFAR YLVGFAPLYR TDDEKVIKTL NVTRLPHLVA IRHGVAFSYS 300
  301 ERSVSAMRNT FQLIKWASLL KYPLVPELTP AVVENLDSDS YLAIALINPT SQVKASKAIS 360
  361 TVQEIGLKWT LKLREVERKQ LLTAREKWWD HLRMLKQKGY DDVAFLAAEY SLPLPKNKKV 420
  421 TFVWVNSLQW KTWISHTFHI DPMGPSRFVL MDPSRMFYWD SSAKGLPLTL DDSSLILDTT 480
  481 FRVLAITGEG LPHEFSIPRG YVYLSEIKQY SSLILISLWI SLILFVSFLN RRLILHYSFE 540
  541 SVHQLKTLTR KFIYSSLLKQ D

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle