YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1827.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	272	0.94
Transmembrane Helix	273	293	0.87
Non-Cytoplasmic	294	302	0.82
Transmembrane Helix	303	326	0.89
Cytoplasmic	327	346	0.97
Transmembrane Helix	347	369	0.88
Non-Cytoplasmic	370	377	0.76
Transmembrane Helix	378	398	0.94
Cytoplasmic	399	408	0.71
Transmembrane Helix	409	427	0.86
Non-Cytoplasmic	428	433	0.72
Transmembrane Helix	434	454	0.56
Cytoplasmic	455	498	0.52
Transmembrane Helix	499	519	0.77
Non-Cytoplasmic	520	525	0.69
Transmembrane Helix	526	548	0.80
Cytoplasmic	549	568	0.79
Transmembrane Helix	569	591	0.87
Non-Cytoplasmic	592	595	0.67
Transmembrane Helix	596	612	0.61
Cytoplasmic	613	682	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGKVIEGQ SVAEWASAYF DYKKGKKIIA GIAKNPSEGL YGTSGILGET PEEAIVKRGQ  60
   61 IHRFHPLFQE FLDQQANKVE EFFENLVSDA RERMDLISDQ VDIYEKLRAF KKGTLESGSV 120
  121 VLIQKQHSKL RQRLDSILNF SRLQPAYHIP ARKSVPTDAY TPMVSYRKLK SKLKTTLLDF 180
  181 YDYLKLVSQY QHLNQQAFRK IVKKYDKTLH TDLQGFWVDY MSRYTFTDFS ITTNWQLHVE 240
  241 DIYARLFTNH NKKLALEHLK SFRQKEHFSA NSMRFGLLFG AGLPLAIEAA CYYNATEQSS 300
  301 YLLQIWGGFF LVIFAFVLFD LDCYVWEKTR VNYMLIFEFN QRKSLNWRQH LEIVGAVFFI 360
  361 FSLFFFLCMR NFFPGFTIYF PALFLGVVGT FLIAPVIVPY WRMRRYLIIQ LIRVFLSGLS 420
  421 TVHFQDFFFA DQMVSLTYAC GNISLFFCLY KRLWRQPQLC NSSHSPLLGF FTTLPGILRV 480
  481 FQCFRRYSDS LKSFPHLVNA LKYIFNILAQ MFLSLWRIHP GLKYRVLYTI FAGVNSLFSY 540
  541 TWDILMDWNL LVRKDGRWQF REHRILKQLW PYIIAMILNF IVRSSFIFYC IFPNHIQHSS 600
  601 GISFFVTLAE IMRRCMWNIL RVEHEEIYNR ENLRAARELK PLDFVKPHSD VFVSHQISSD 660
  661 KNYTDDEDSM DDQTDVDEAQ FS