YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1A6.05c
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNEIKLQM EYASSYETWL EAAEKLDVIE GKYQWREQKE SDEYDYVLVE SRLHELRRHR  60
   61 LSKNTRLLLG LLRNSVARDF ANMDNSRLYN YAHSGTKKLI DEFIQEVLMC LTYLEETPDL 120
  121 SLDEKITEFS RLKLTTGNTA LILSGGGTFG MTHIGVLQSL HEQGLVPKII CGSSAGAIVA 180
  181 CAAAVRNKEE QEILLRQFHT GDLSVFTDPN AAPPSVIQSV KQYFTRGCVL DISHLERVMK 240
  241 LLIGDFTFQE AYDRSGYILN VTVSCGSLFE MPSLLNYITA PNVLVWSAVV ATCSVPFLFK 300
  301 RATLWERDPL TREVSAFCVT DAPLWMDGSV DNDIPHAKLT ELFHVNHFIV SQVNFHIVPF 360
  361 IMDPTSHNWV ERCCKKAIDL AAQEVSLTFR LFAELGIFSV LFTKLQSVIT QKYSGDITII 420
  421 PRLNYREVNK VIKNPTPSFL LDAATRGKRG TWTKVPVTRN HCAIEILIAA AYTRLIKRSK 480
  481 SLK

Type	Start	End	Confidence
Cytoplasmic	1	134	0.83
Transmembrane Helix	135	157	0.76
Non-Cytoplasmic	158	164	0.87
Transmembrane Helix	165	186	0.62
Cytoplasmic	187	255	0.63
Transmembrane Helix	256	271	0.33
Non-Cytoplasmic	272	282	0.47
Transmembrane Helix	283	299	0.61
Cytoplasmic	300	483	0.55