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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC29A10.07
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTRVASSER PRPLVPESIV DAPTQRLYAI GVFVALQAYK IYDLLKLETS SISDVPKSGF  60
   61 LVKWIIIDAI YLRLLPKFRI PWLSFQPAAT LLQIAIFAAI NLLLSSLSSL KWISIGSILL 120
  121 PYFKKKELSI SEHKINPNNV IHNSSRILGQ YTLQVLPEGT AKINPLHENY CLNSLRKDQY 180
  181 VDLAIQFNST IPKYIQYSHV DLETKEETLV EVSGRSLRKL LSSSSKNPKE PRLQTIYLKT 240
  241 NKRGLYTLKH VVDKSKLDVR IFRSEAVVVS CPTATFASRQ SGGRLRERCV GDTDNAELKV 300
  301 TGVAPLQVTY RNWDGKHFNT HIIDSTIPDD FHPPAVVLSS NPKDIVFYKG IDIQWARSSE 360
  361 IFVPINTLLK APGQWIYAVT QVTDALGNSQ QFPSNDQFLL RFAHGYTEAD GESHSLPENV 420
  421 YSVFVHQRPD IQFRGCSIES PANLFPNKET SLSLYSSFSE YNSLEVGVDR YELGLDPQNI 480
  481 TVPPLSHKTY QISPRSSANI NVKKPGIYVL SSVSSQYCSG EVLEPNTCLV VTPPEAKVSV 540
  541 SFEEISDQCA GSIGARADLE LEGTPPFTIA YRMTKDNEAS RIQYVTTDRT RYQLNFTPKK 600
  601 AGKYRYIILG IQDANYGYRE LSGSSFYKDQ TVFPLADASF EERRNGDLST VVKTSCIGDT 660
  661 MSLPVLLTGS APWTLEYEIF RNNKREESHV VESKDPRYIL EVPMLVHGSQ YTITLVSVKD 720
  721 SNGCKRSLNT ADTVIKVRRQ RPTATFYSSD NTYTLKSVEG ALMKIPLRLA GEKPWYVEYS 780
  781 HTSGLNKVSH HKEVLNDPNS YLTVRKSGTY TLLSVSDSSC PGTIQNVEQK YQVEWLPRPF 840
  841 LSIPSLESSV KGKTRYYEQN AVCAGDSSAF EVQLSGSGPF LLKHDKILVD EKSKTYPKQK 900
  901 SELSTVQNTV LVKADTAVPG VYHYEFTKLS DSLYSDSDAV TIVNNQSYQA VVLQRVNSLP 960
  961 KASFMNVEKL YTFCINTDVT QSNAQLIAIQ LQGASPFSLV IGIKNELTGS VSKYTLNDIH1020
 1021 ESVYKFAFPQ EQLTLGKHVV RLLQVRDANG CAASITKTQP AAKVSVVEMA SLAPLGSRQY1080
 1081 YCVGDRLSFA LQGLPPFDVE YEFNGVTQHA TSDSHILTRL IELPGVVAMK SISDHGSHCK1140
 1141 SYINPPIEQI VHDIPTVRIS NGKDVIENIH EGDQAEISFH FTGTPPFSFS YARRALGKKR1200
 1201 PGKVLETHTV TGINEYEYKV LSSVEGVYTV LSVQDKYCRY PQDSTSSSNI 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle