YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	trf1
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRSLDPSD DFKGQKRLAI DPESTALEQD RQMLQQLSEQ NSELEPQNVA PNAEIPLGFD  60
   61 LSGIQFNMTP DFYLRMNQGM DYAFNQPNPI ATPQQLLRTS LIPTLGNLSN IILSILGKPV 120
  121 QEASAIVTNP ASEMGMAFTK VMNMFRMVKD IYTEESFIYS SAIGMRTPSQ RSTTRRANLA 180
  181 IFLAAVYGAL QIGFFHLNEN FLEVFAPDES NILTNQGTLY MELKTQAYIS AMAQAERPKG 240
  241 DILNDLFPSD MAHRFLIRRN AKLDDKLTYV EKQIIEKCTA RKERLANFSP QEALNEVYPW 300
  301 GKFLSEIACY IHNNYSSISA IPIPANSFKR RSKKNGLRFK AGEAESSPSE SGSDLTDSLA 360
  361 FGIPSSTFDG SSETQNVSSV VLYDQVRHMT NNNLNNKRTR RVANRRSWTK EEEEALLDGL 420
  421 DLVKGPRWSQ ILELYGPGGK KSEVLKYRNQ VQLKDKARNM KLFFLKSGQV VPAALQCVTG 480
  481 DLRRD

Type	Start	End	Confidence
Cytoplasmic	1	175	0.80
Transmembrane Helix	176	195	0.77
Non-Cytoplasmic	196	485	0.98