YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sif2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRIGPQRS TKTAAKLRLL PSTEEFDDFR RQDTGREVYS QIPQIEGSTA KRDAEHLGKR  60
   61 HREFLPRVTA YCTCDTFRVD LLFKFFQSRR SSHKTRPKQF DECIYSPYSY NNEETTDLLP 120
  121 DTLESSRGTL NRESSQESLQ SIFEESGLDR NQPLFREVFC FTYGVVVLWG YTIDEEHRFL 180
  181 RELGRFEIEK LKIEDMEVEE FNYYITTLYQ PRIFNDFIAL RDASNYMIRL SISHAIAQSV 240
  241 KISLFEELVN ETIDATKDTP QMIAETGRVN LKREEIMMAV GQLFILRINI NLQGSVLDSP 300
  301 ELMWTEPQLE PIYTAARSYL EINQRVALLN QRVEVIGDLL SMLKEQITHT HDESLEWIVV 360
  361 ILMGLLVLIA LFSIVVRLAD GFKLNDFRLV INNSNKFILL FANTLFYIGG LEAVSITTEE 420
  421 SFLFLHYVYI IEEMGKGKKI KPYLSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	356	0.89
Transmembrane Helix	357	376	0.97
Cytoplasmic	377	396	0.83
Transmembrane Helix	397	416	0.83
Non-Cytoplasmic	417	446	0.82