YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	liz1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.82
Transmembrane Helix	98	118	0.92
Non-Cytoplasmic	119	124	0.74
Transmembrane Helix	125	146	0.89
Cytoplasmic	147	157	0.81
Transmembrane Helix	158	178	0.91
Non-Cytoplasmic	179	193	0.86
Transmembrane Helix	194	214	0.93
Cytoplasmic	215	258	0.98
Transmembrane Helix	259	279	0.90
Non-Cytoplasmic	280	300	0.81
Transmembrane Helix	301	320	0.93
Cytoplasmic	321	328	0.87
Transmembrane Helix	329	349	0.94
Non-Cytoplasmic	350	356	0.83
Transmembrane Helix	357	377	0.94
Cytoplasmic	378	388	0.89
Transmembrane Helix	389	407	0.94
Non-Cytoplasmic	408	421	0.84
Transmembrane Helix	422	443	0.95
Cytoplasmic	444	514	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLNRLAKT FSPYYGLNKV EQKLLIKIDW FILSYCCVSY FINYLDRSSI NNAYLSGMQE  60
   61 DLKMHGNELQ DINVVFTCGY IIGQLPGSYA LQRVPARLWF SVMNILWGLM TIFSFAVHSV 120
  121 RALMILRFFM AVAEASTFAG THYILGAWYK ESELCKRAGI FSASGLVGTM FAGYLQTAVH 180
  181 SSLNGKGGLS GWRWLFIIDG ILTIPLSLYG LFLFPDVPET TKAPYFTEQE KELSFKRLPA 240
  241 RPKKKPLTLK AIKDIVRSWR IYGLCILWIF SGETQAIAVN VLMGQWMKWS NKFSVAQINN 300
  301 YPTVITAVGV VSTLGASVIS DKLAGNPRWP FGLFLCVITT VSATILLAWN VPDGAKFFAY 360
  361 FASGCTYAGQ AVWFSWANDI CRDNDQERGV VVFLMNMCQN IWHIWWAPIM YPNTDTPRFI 420
  421 KGLIGLLVVG GIVFVSSCIV SYMQIRDKRI KRSIQDAKDF DDVFTEHESL ELKKIGKNDE 480
  481 ESLNTTNAVK EISSPGLVIT RQRISMPKET NAQD