YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1450.15
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCTFIKNTL QSNFGYFLTS CHSHILVTGG SQGLGKAIAK ELVLRGANVT IVARTVTKLQ  60
   61 EAVAELSDSK IHEDQQVSFE SVDLTSYESV HSMIERLPFC PDHVVHCAGS CIPGFFTELD 120
  121 PSVFEKQMRQ NYLASVYVCH AAIRRMKEIS PSYSRRILLV GSLLSSLPII GYSAYSPVKA 180
  181 AVRNLADSLR QECILYDIEV SVYLPSTILS PGYEQENTLK PELVLQMEGM DSVQTCEEAA 240
  241 SHCMTGLDRG DFLIANESTG HLMKNHCRNS SPHDNPILEY LFALVSLLAW PFYRRKLDSL 300
  301 VYQYALEKGY RQPSSSRNSW IFTLLLTFTQ LTIFYLSLNC LIENPYRMLR NTFPIWFIMQ 360
  361 TLQIYIQSPR PPLTPKRLLA GAASMLIGSL LISFILVAFG APLLHDFHLT YFCALTLSVF 420
  421 TVYPLASTLA FNTEQWQRFL TLKSFNVIGS MQLRSWGPII GAWFGAFPIP LDWDRPWQAW 480
  481 PITIVIGAFL GYAFAAIVGE ILQ

Type	Start	End	Confidence
Cytoplasmic	1	152	0.52
Transmembrane Helix	153	172	0.45
Non-Cytoplasmic	173	319	0.76
Transmembrane Helix	320	342	0.88
Cytoplasmic	343	377	0.67
Transmembrane Helix	378	401	0.91
Non-Cytoplasmic	402	407	0.80
Transmembrane Helix	408	431	0.90
Cytoplasmic	432	451	0.78
Transmembrane Helix	452	471	0.84
Non-Cytoplasmic	472	478	0.83
Transmembrane Helix	479	499	0.94
Cytoplasmic	500	503	0.72