YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC15C4.04c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.96
Transmembrane Helix	64	86	0.89
Non-Cytoplasmic	87	95	0.83
Transmembrane Helix	96	120	0.86
Cytoplasmic	121	140	0.77
Transmembrane Helix	141	159	0.84
Non-Cytoplasmic	160	186	0.86
Transmembrane Helix	187	206	0.90
Cytoplasmic	207	216	0.80
Transmembrane Helix	217	237	0.93
Non-Cytoplasmic	238	254	0.92
Transmembrane Helix	255	275	0.92
Cytoplasmic	276	295	0.87
Transmembrane Helix	296	318	0.88
Non-Cytoplasmic	319	349	0.93
Transmembrane Helix	350	370	0.90
Cytoplasmic	371	396	0.89
Transmembrane Helix	397	419	0.89
Non-Cytoplasmic	420	426	0.75
Transmembrane Helix	427	450	0.88
Cytoplasmic	451	468	0.81
Transmembrane Helix	469	488	0.92
Non-Cytoplasmic	489	497	0.83
Transmembrane Helix	498	519	0.92
Cytoplasmic	520	542	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVSNVSVN EQGKFNDKEE GFSNLKSLKH VSHSETDFEV SNDEDNQLLE LGYKPVFKRE  60
   61 FSTWATFSFA FSISGLFATV VTTYSYPLIS GGAPSAVWCW LIAGAGCMCI ALSVAELVSA 120
  121 YPTSGGLYFT CKDLVPARSM PVVAWVVGWL NLLGQAAGVS STDWSCAQLL LAAVSISTDL 180
  181 KYIPTNQHIV GVMAAVIVFH GLVNSLSTRW LDRITRFYAT FHLIVLVVCM ICLLAKCPKF 240
  241 NTGKYVFTDV QASSGWHPIG FSFLFGFLSV AWCMTDYDAT AHIAEEIENA AVRAPNAIAL 300
  301 ALSITYVLGW VFNIVLAFTM GTDLDSLINS ELGQPVAQIF YNVLGKKGSM AFTILSFIII 360
  361 NFTGITAMQA NARTIWAFSR DQALPFSRYW YKINKTTTTP VIAVWLNVVF CIALNLIGLG 420
  421 SIEAIEAIFS VCAIALDWSY VIPIACKLIF GKRLNYKPGP WNLGWASHFV NAYAVCWTAF 480
  481 VSVIFLMPTV RPVTPQNMNY AVVVLAGVLL FSLVYWWSGA RKSYIGPRIN VDMESEDPFK 540
  541 TE