YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1281.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAPSATAFS SATTQPTTEG NASMRKRTIP VVPSVPERKW DPKAPKHIQE QPWTMQNWWR  60
   61 HLNWLHCMLI FGLPMIAIYG VFTTPLQTKT LIFAIIYYAY SGLGITAGYH RLWSHRAYKA 120
  121 KKPLEYFLAA GGAAAFEGSI RWWSRDHRAH HRYTDTDKDP YNVKKGFWYA HVGWMIILQN 180
  181 PRRIGRSDVS DLNSDPFVMF NHRHFLPIAS FMAFIFPSLF CGLLWGDYRG GYFYAGVCRL 240
  241 VFVHHATFCV NSLAHLIGSQ PFDDTNSARN HFITALVTLG EGNHNYHHAF PNDYRNGLRW 300
  301 YEYDPTKIFI YIASLFGLAY NLNTFPDNEI QKGIVQQKQK VLDRWRAKLN WGIPLEQLPV 360
  361 MEFEDFLEQS KTRPLVLING VVHDMTGFEH PGGQGLLRSA FGKDATAAFN GGVYDHTNGA 420
  421 HNLLSTYRVA VVRGGMEVEV WKSGAGAQLP MKDTQGQKIV RVGEQITRIQ PPIEAAAAN

Type	Start	End	Confidence
Cytoplasmic	1	61	0.98
Transmembrane Helix	62	83	0.93
Non-Cytoplasmic	84	90	0.83
Transmembrane Helix	91	113	0.90
Cytoplasmic	114	123	0.92
Transmembrane Helix	124	143	0.77
Non-Cytoplasmic	144	204	0.79
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	235	0.68
Transmembrane Helix	236	258	0.73
Non-Cytoplasmic	259	479	0.67