YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stt3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	44	0.85
Non-Cytoplasmic	45	88	0.93
Transmembrane Helix	89	111	0.85
Cytoplasmic	112	120	0.83
Transmembrane Helix	121	141	0.93
Non-Cytoplasmic	142	147	0.83
Transmembrane Helix	148	165	0.93
Cytoplasmic	166	175	0.69
Transmembrane Helix	176	193	0.84
Non-Cytoplasmic	194	213	0.67
Transmembrane Helix	214	234	0.88
Cytoplasmic	235	242	0.81
Transmembrane Helix	243	265	0.87
Non-Cytoplasmic	266	272	0.84
Transmembrane Helix	273	292	0.94
Cytoplasmic	293	303	0.86
Transmembrane Helix	304	330	0.85
Non-Cytoplasmic	331	365	0.95
Transmembrane Helix	366	385	0.93
Cytoplasmic	386	393	0.86
Transmembrane Helix	394	428	0.77
Non-Cytoplasmic	429	473	0.66
Transmembrane Helix	474	498	0.76
Cytoplasmic	499	752	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSATITSK KGVKSHQKDW KIPLKVLILI CIAVASVSSR LFSVIRYESI IHEFDPWFNF  60
   61 RASKILVEQG FYNFLNWFDE RSWYPLGRVA GGTLYPGLMV TSGIIFKVLH LLRINVNIRD 120
  121 VCVLLAPAFS GITAIATYYL ARELKSDACG LLAAAFMGIA PGYTSRSVAG SYDNEAIAIT 180
  181 LLMSTFALWI KAVKSGSSFW GACTGLLYFY MVTAWGGYVF ITNMIPLHVF VLLLMGRYTS 240
  241 KLYIAYTTYY VIGTLASMQV PFVGFQPVST SEHMSALGVF GLLQLFAFYN YVKGLVSSKQ 300
  301 FQILIRFALV CLVGLATVVL FALSSTGVIA PWTGRFYSLW DTNYAKIHIP IIASVSEHQP 360
  361 PTWSSLFFDL QFLIWLLPVG VYLCFKELRN EHVFIIIYSV LGTYFCGVMV RLVLTLTPCV 420
  421 CIAAAVAIST LLDTYMGPEV EEDKVSEEAA SAKSKNKKGI FSILSFFTSG SKNIGIYSLL 480
  481 SRVLVISSTA YFLIMFVYHS SWVTSNAYSS PTVVLSTVLN DGSLMYIDDF REAYDWLRRN 540
  541 TPYDTKVMSW WDYGYQIAGM ADRITLVDNN TWNNTHIATV GKAMSSPEEK AYPILRKHDV 600
  601 DYILIIYGGT LGYSSDDMNK FLWMIRISQG LWPDEIVERN FFTPNGEYRT DDAATPTMRE 660
  661 SLLYKMSYHG AWKLFPPNQG YDRARNQKLP SKDPQLFTIE EAFTTVHHLV RLYKVKKPDT 720
  721 LGRDLKQVTL FEEGKRKKLR RPAKTNEIPL RV