YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YI26_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.97
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	118	0.83
Transmembrane Helix	119	141	0.78
Cytoplasmic	142	151	0.53
Transmembrane Helix	152	177	0.62
Non-Cytoplasmic	178	196	0.65
Transmembrane Helix	197	215	0.96
Cytoplasmic	216	224	0.72
Transmembrane Helix	225	248	0.85
Non-Cytoplasmic	249	272	0.82
Transmembrane Helix	273	295	0.78
Cytoplasmic	296	310	0.95
Transmembrane Helix	311	331	0.94
Non-Cytoplasmic	332	366	0.92
Transmembrane Helix	367	388	0.89
Cytoplasmic	389	406	0.95
Transmembrane Helix	407	429	0.89
Non-Cytoplasmic	430	438	0.88
Transmembrane Helix	439	462	0.89
Cytoplasmic	463	481	0.82
Transmembrane Helix	482	503	0.88
Non-Cytoplasmic	504	517	0.91
Transmembrane Helix	518	538	0.93
Cytoplasmic	539	583	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPDRSIDI DLEKYPSTAT KSVYGQSKDD KNVFDIHPTE SEVIPGEVEY ADTPSHQNFL  60
   61 QKFFSDFKPV KADREDGVAL KRHLKGRHMQ MIAIGGAIGT GLFVGSGSSL ADGGPASVII 120
  121 DYTLIGIMMF FTVYALGELA VSYPVAGGFY NYAVRFIDPA WGFAVGWNYF MNYFVTFPLE 180
  181 LTTCAITFRY WTDINSCAWI TIFLVFVICI NLFGVRGYGE VEFILSTLKV VATTGFIILA 240
  241 IIINCGGVPT DPRGYIGGKI IKNKPFRHSF KGFCSVFTTA GFSFSGTEVV GLAAAEAEDP 300
  301 QKSLPRATKQ VFWRIAIFYV VSLILIGLLV SPDDPRLMGN SSDGSTSPFV LAIKEANIRG 360
  361 LPSVFNAVII ISTVSVANSC TFTASRTLHA MAAKGDAPRF FAYTDRLGRP LLAMAVCLLF 420
  421 GFFAYINAAG DVSDTVFDWL LAISGISNFF SWGSINLCHI VFRLAMKKQG RSLDQLGFVS 480
  481 PMGIWGSAIG LAFNILCLMA EFYVSLFPIG SKPNANDFFQ GYLAAPIVIA FFIGYKIYDR 540
  541 SHIPSLSKLD LDTGLRTYPP KDKESEKIRD AKGFFKWIWQ SLC