YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1039.04
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.96
Transmembrane Helix	57	74	0.88
Non-Cytoplasmic	75	99	0.88
Transmembrane Helix	100	120	0.92
Cytoplasmic	121	127	0.84
Transmembrane Helix	128	147	0.94
Non-Cytoplasmic	148	153	0.84
Transmembrane Helix	154	176	0.90
Cytoplasmic	177	186	0.90
Transmembrane Helix	187	209	0.93
Non-Cytoplasmic	210	221	0.82
Transmembrane Helix	222	241	0.91
Cytoplasmic	242	282	0.90
Transmembrane Helix	283	306	0.78
Non-Cytoplasmic	307	325	0.79
Transmembrane Helix	326	345	0.93
Cytoplasmic	346	352	0.84
Transmembrane Helix	353	373	0.94
Non-Cytoplasmic	374	380	0.80
Transmembrane Helix	381	404	0.91
Cytoplasmic	405	414	0.92
Transmembrane Helix	415	436	0.93
Non-Cytoplasmic	437	446	0.86
Transmembrane Helix	447	471	0.89
Cytoplasmic	472	507	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSISSISK ASMNSDEKLD KKEWDQQLPI DFGEGEDVTT EVYILDHKAE RRLCRKFDFR  60
   61 ILPLLALLYL FNALDKSNVS NAKTNGMDKD LGFVGDQYNI MISIFYIPFV LCAFPFSYLY 120
  121 KRFGAARILP FFMLSFGAMS LCQAAVKNFG GMMAVRWFLG MAESAVLPGV VYYLTTFYRR 180
  181 TELARRLAIF YAAANVSSAF GGLLAYGVFH IKGGKLQGWQ YLFLIEGGVT FLCAIVIFLV 240
  241 LPVSVETANF LTDEEKTLAK MRIENDSSSA ISEKLSFKQS LTVFKHPIAI LWLLEEMALG 300
  301 VPLNSINNWL PQIVAAMGFS SVNTNLMTVA PAISGAIWLL VFAFISDFLK NRGIVLIAAI 360
  361 STTMIGFIVY GSIDIMNHIG VSYFACFLMT AGAAASSVLT STWYNNNTPN ESRRAVFTSV 420
  421 GVPLANVMGL VSANIFRPQD APKYVPALGI TAGFGGLGIL LVASISVYMF FDNRRRDNAQ 480
  481 GVKKTFADVS TKDLGEGPAN PNFRWFL