YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM54_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTIKSYMP GRNMSIFLGF VAGISGAIYY DRRQKNLIIE KYCSQVRHLA DQPMAPLELP  60
   61 RKLKVYLHGP PGDGIYVARE EFEEYIRPIF NAAAIEFETV ESKGEGNLLE QVARTVYNKR 120
  121 HNISEVSEPE KNLLSVLKPS VDPPAIVLLG RHALKEFLYG VRYGFSDDIM KRKLETEKLE 180
  181 ANNKEEKEEK EGKDDKDDKE DSNDTKNDKK ISKNEVDSSL IEASPLTGQV PPKFLDTIAI 240
  241 FPLPNLLGFS NTPKRLSRFF KRRELADELG AIAVNVALSR DVTKFPKQDG TLLLAEEETD 300
  301 WPKQFFTRSD LENRIWTAPF LQDSDEIRFF ENIDIFDSTK AKQDKYE

Type	Start	End	Confidence
Cytoplasmic	1	10	0.67
Transmembrane Helix	11	30	0.72
Non-Cytoplasmic	31	347	0.97