YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rft1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSDSLLQS SSKGLRSSIF FQGSSRILTF FLNQLTIRLT SPSAYAFSSI HFEILQSTIL  60
   61 FLSRESVRLA MQRIPSENAI ITSTSTESNK SKKLSDQLQL IKNTSLISVY IGIVISLLVS 120
  121 LFYFYSLPNF PYSKTCIFIY TVSSFIELLS EPYYEVLQWR QKFSKTASAE GLGTIICSLL 180
  181 SFAISVLGRN KAPSSLPFAL GNLSEKVTIF FTLRYFAKQP FSIFLHKVGE NERYIFWDSS 240
  241 TLRIICSHTY QVLLKHLITK GDKIMVAWYA SPSAQGPYAL ASNYGSLLAR IVFRPVEDHS 300
  301 HIVFAQLTHY KNKKDEKKAL NLLAWILKLY SYMSLFILFG SNYSDIVLLF GAGSKWASPD 360
  361 SSSILSWYAM YIPFMAANGV LEAFYVSAAN SSQLYDQGKC YLASAVFYFI TGKFLLSWFN 420
  421 LGSHGLILAN ILNLSLRICF ALRFILHNYK DFSLPRSLPR PFLLALSILL SIISSFLVKH 480
  481 WRESKVPFLV YFLSAPSLAI LYSCFIILVD KDVRGYAKIL LSKYYIK

Type	Start	End	Confidence
Cytoplasmic	1	105	0.66
Transmembrane Helix	106	125	0.93
Non-Cytoplasmic	126	166	0.61
Transmembrane Helix	167	188	0.85
Cytoplasmic	189	325	0.84
Transmembrane Helix	326	349	0.76
Non-Cytoplasmic	350	366	0.79
Transmembrane Helix	367	388	0.90
Cytoplasmic	389	397	0.85
Transmembrane Helix	398	417	0.87
Non-Cytoplasmic	418	425	0.67
Transmembrane Helix	426	446	0.91
Cytoplasmic	447	460	0.85
Transmembrane Helix	461	480	0.93
Non-Cytoplasmic	481	487	0.85
Transmembrane Helix	488	509	0.95
Cytoplasmic	510	527	0.96