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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPCC1450.16c
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALFNFWRI MYANISSIWL LVVSFFEWLF SATSISQQRG SGPRKGKVVM NKDCRSWEDW  60
   61 KVLATTIDKA SGRWKWRFTP ASDKYDYLLI DRCTVSLKRY RQRKSVYPML MFLRSSLLRN 120
  121 FGNIGNSSLY TENYSGTKIL IEEYVREVNN CLEFLYHTKR LSYDVKCDFF SAARISFGTT 180
  181 CLYFNGGTAF GLYHFGVAKT LWKRNLLPQI LAGCASGALI ASLLSVYRDE ELNGLFDTFP 240
  241 SELWKICQQT SDYSLSKVVE YGNMLDISMI ASFVRQRLGT ITFQEAFERT GRIVNIVAPP 300
  301 SAVSGSPQVL NYFTAPNVLI WSAVCSSNSW AAIYRSSPLL AKLPDGSTEV CTPKNFIWPY 360
  361 AGLPNTGRSN PYARISEIFN VNHFVITQSR PSLFPTFYDE LHHHRVSGYS LKMIRLVGLE 420
  421 MAYRFRQLDI LGLLPPRLRR FFVDDYVPSA YITLTPTFSF SDIKHAFTKP SLSDIQYWIL 480
  481 VGERATWQAI PLLQVRCKTE ISLRHRMWKP ILF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle