YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1198.06c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIYSVGLFY FFLVFIGAQA MDLDITDYQS IDNTVNIMMK DLMNYWNASS QAFVASYWWV  60
   61 TGATMGALLY NYELFNNDTY VDLISSSLLY NAGSGFDYQP SFEYFNLGND DQGMWAAAAM 120
  121 DAAEANFSPP NSTEHSWLEL TQAAFNRMSG RWDSSTCGGG LRWQAFAWLN GYSYKASVSN 180
  181 ALLFQLSSRL ARFTNESVYS DWANKIWDWT TDVGFVNTTT YAVYDGADTS TNCTTLDPSQ 240
  241 WSYNIGIFMV GAAYMYNYTG ETVWRERLDG LISHATSYFF TDDIAWDPQC EYFDDCNSDQ 300
  301 TAFKGIFMQS FGNTIRLAPY TYDTLYPLIQ TSAAAAAKQC CGGYSGTSCG IYWFWNNGTW 360
  361 DDNYGVQEQF SALQAVQMLM IEYAPEIATL ASSTDNRSNS TYASNVVIND TNTTTTIVVK 420
  421 EKDRGGAGFL TFLSAIFILG ASIWALVEDE EGKIPSRGKK GIAISS

Type	Start	End	Confidence
Signal Peptide	1	20	0.87
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	425	0.85
Transmembrane Helix	426	447	0.82
Cytoplasmic	448	466	0.62