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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pdf1
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFAIPIIS LDKVRLAIND GASEQLPVVI WHGLGDTPTS FTLTEVSQRV QKLTKGAVYA  60
   61 IRVGDNEFED IKAGYLGKLE DQLDEVCDLI GNEDSLSNGF YALGLSQGGL FLRALAQTCD 120
  121 AAKIRSLITL GSPHSGINTI PGCSPTNLIC KAVVHSILGL GIWHSWIQNH VVQAQYYRTE 180
  181 KQYDKYLENN KFLTHLNNEV LHDNYTRNIE KLKELDNLVA VSFERDDIVE PPYSTGFGWI 240
  241 NETTGENIEM EDFVLYESLG LKDLVNQGKL ETISFPGRHL QMRWGDFDAL VLKYFKDEKE 300
  301 EKTELEESTR PSNFLSTYFV SPLVSAIDGT VDYLHGKSLF PEKRNFKELT MRKRSIVTPE 360
  361 DSEEVYPYIS EFVAASNVSE EKGPKSFANL AFITIFSHFF YHIDDMWRST LGLFSLIPQI 420
  421 IGIIYLTVMF TGRELDTFMQ FGGQVVNEFI NYVVKVSLKY PRPADIEYGV GYGMPSSHSQ 480
  481 FMGFFSAYMI AWDYKYRRSQ CFSMLSFAKY AIYLTLSTFV CSSRYLLDFH YLTQVVYGYM 540
  541 IGFGVGLFWV YLVGKLRSLG VTKWLLSLPP LQFFYIKDTI PHSKDNHKRQ WLESKQFKNQ 600
  601 KSN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle