YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abc4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.84
Non-Cytoplasmic	41	54	0.81
Transmembrane Helix	55	74	0.89
Cytoplasmic	75	94	0.94
Transmembrane Helix	95	114	0.96
Non-Cytoplasmic	115	124	0.80
Transmembrane Helix	125	144	0.89
Cytoplasmic	145	153	0.81
Transmembrane Helix	154	174	0.92
Non-Cytoplasmic	175	191	0.86
Transmembrane Helix	192	210	0.94
Cytoplasmic	211	295	0.91
Transmembrane Helix	296	317	0.88
Non-Cytoplasmic	318	334	0.89
Transmembrane Helix	335	357	0.93
Cytoplasmic	358	415	0.91
Transmembrane Helix	416	432	0.75
Non-Cytoplasmic	433	439	0.56
Transmembrane Helix	440	461	0.84
Cytoplasmic	462	514	0.89
Transmembrane Helix	515	541	0.75
Non-Cytoplasmic	542	547	0.58
Transmembrane Helix	548	568	0.83
Cytoplasmic	569	893	0.98
Transmembrane Helix	894	917	0.89
Non-Cytoplasmic	918	935	0.93
Transmembrane Helix	936	958	0.89
Cytoplasmic	959	1007	0.96
Transmembrane Helix	1008	1027	0.94
Non-Cytoplasmic	1028	1034	0.71
Transmembrane Helix	1035	1054	0.94
Cytoplasmic	1055	1064	0.85
Transmembrane Helix	1065	1089	0.76
Non-Cytoplasmic	1090	1120	0.84
Transmembrane Helix	1121	1141	0.65
Cytoplasmic	1142	1147	0.52
Transmembrane Helix	1148	1168	0.60
Non-Cytoplasmic	1169	1469	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFHHRPFK GGFGVGRVPT SLYYSLSDFS LSAISIFPTH YDQPYLNEAP SWYKYSLESG  60
   61 LVCLYLYLIY RWITRSFTVK QTVGSEFSGL RKAHGILLWL LSILFLGMTA FMFVNDAFPT 120
  121 AFSDPPVKIC LLAYSVHLFL LHSLRMIYPR ARPTLYHAAV LLNLLLLPPI FHFYSYPFFF 180
  181 VDHPPLSSYS PFLWFYFFIT IVGNFIPLFT PRVWYPLFPE DNYQPSAEQV CSMFNFACSY 240
  241 GYLNPLVLTA KRRVVEVDDT PVIPDYDKNK AWTYRFERMK TPSLFITIHK IFWRQILGMG 300
  301 VSSFMVSVCQ FLSPIALNRL LKHLESPSSS SVNPLVWIVL LLTGPFLTSL FTQFYLFMST 360
  361 RYLARSYTTL VQQIYNKVIR SRFVQNKSGD SKVGRSNNLI STDVDDIGEI REFIHIIVRA 420
  421 PVEIAGSIYL LQKLLGWSAY VGLALTVLTC SVPIVLGPLV AKLTLRANRA TDSRIELMSE 480
  481 LLQSIRITKF FGWELPMLDR VKQRRQVELN RTWKLLLMEI CIQVLVESLP VFSMFATFVV 540
  541 FTTIMGQTIT PSIAFTSISL FSFIRTQFSW IAYLMRQIVQ IFVSIGRVSD FLNDPDEVDP 600
  601 VNTIEDTSQE IGFFNASLTW VSNPSPGDFC LRDLNIVFPR NKLSIVIGPT GSGKSSLISA 660
  661 LLGELSLNKG SYNLPRSKGV SYVSQVPWLR NATIRDNILF DYPYIEERYK KVIQACGLLT 720
  721 DLQSFVASDL TEIGEKGVTL SGGQKQRIAL ARAVYSPTSI VLMDDVFSAL DIHTSNWIYK 780
  781 HCFQSSLMEN RTVILVTHNV HLFMDSAAFI VTVKNGSAFP VTDKSSPLLF LAEQAASASE 840
  841 AAAPDLAAIP IPNEVDDAEA ADEKDGKLVE EEQRVTGDVV FSEIFSYMKH FGSGFYVAAV 900
  901 LLFFVTTQAT SILIDLWVAF WTNSSVNSPD VNNNKFLFVY GTMLLAYSLL DFLRTVSYDR 960
  961 GAWWASRKLH DSMLESVFGT FASWFDKTPT GRIVNRFAKD IRSIDMNLSG WLFFSINCFL1020
 1021 SVAGGILSVS SAMPIFMIPA VIVCLAGYYF GLLYTRAQVG VKRLISIYTS PIFSLLGESI1080
 1081 VGVSVIRAFN RQTIFKQMFS ERLDNLVRLQ STSYNLNRWV AVRTDGISGL VGAIAGLIAL1140
 1141 LQKDLSPGVV GFSLNQAVIF SSSVLLFVRS CNSLQAEMNS YERVLEYSKL PQEPAPTIAG1200
 1201 QVPATWPKEG DIVFNHVSVS YSAAGPTILK DVNLHINPSE KVAVVGRTGS GKSTLGLTLL1260
 1261 RFTHRISGEI YINGRETQSV NLNALRQRIS FIPQDPILFS GTVRSNLDPF DELEDNFLNE1320
 1321 ALKTSGASSM IMAHTDDQKP IHITLDTHVA SEGSNFSQGQ KQVLALARAI VRRSKIIILD1380
 1381 ECTASVDDAM DQKIQKTLRE AFGDATMLCI AHRLKTIVDY DKVMVLDKGV LVEYGPPAVL1440
 1441 YHNNGHFRRM CDGSGITFLP PETRGSKSA