YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC4B3.13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.83
Transmembrane Helix	133	158	0.65
Non-Cytoplasmic	159	175	0.48
Transmembrane Helix	176	197	0.91
Cytoplasmic	198	244	0.59
Transmembrane Helix	245	268	0.86
Non-Cytoplasmic	269	276	0.82
Transmembrane Helix	277	300	0.92
Cytoplasmic	301	319	0.95
Transmembrane Helix	320	340	0.91
Non-Cytoplasmic	341	365	0.81
Transmembrane Helix	366	386	0.84
Cytoplasmic	387	399	0.79
Transmembrane Helix	400	420	0.93
Non-Cytoplasmic	421	433	0.87
Transmembrane Helix	434	453	0.86
Cytoplasmic	454	470	0.79
Transmembrane Helix	471	492	0.92
Non-Cytoplasmic	493	498	0.77
Transmembrane Helix	499	521	0.89
Cytoplasmic	522	539	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGENDPLLG SYKPKRRRSS LVYGLSRPQF LDTAASEVSP IPQERPTTSL RKPTPRVQRP  60
   61 ATDVSYGALE ETEENESIAS GLSVQEDFNS KAWWKELTLL IKFATPVVLT SLLQYGEVVT 120
  121 TVFSLGHLGK TELAAASLSN MTATITAFAI YQGIVSALDT VGTQSFGSGN YEMVGLHLQR 180
  181 ILAILLLIQF PIFLIWWKIE GILLFLRQDP LTCMFAAKYM RVMMLASPAY ALFEALKRFL 240
  241 QVQGIFHPVT YILAIVVPIN IFLNYLFVWS PWVGFGFLGA PVAVALTLWS ACAVLIIYIM 300
  301 KVNGRQAWGG FSREALKNWG PLCRLAVPGV IMICSEYWAF ELVTFASGVL GTTELASMSV 360
  361 LSTTSTLSYN LAFGVAAAAA TRVGNLIGAG NTKLAKLATH VSINLGAAIG VIIAVILFLT 420
  421 RNTWTYIFTS DKDVVALVAT IIPLVALINI ADNTQCVAGG LLRGQGRQRI GGVVNFIAYY 480
  481 LLGLPVAIIL CFKLDWGLYG LWIGIGAAIL IIAGVETWCS LHVNWDHLVE LANRQFDEA