YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC320.05
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.71
Transmembrane Helix	77	99	0.85
Non-Cytoplasmic	100	107	0.45
Transmembrane Helix	108	127	0.73
Cytoplasmic	128	128	0.10
Transmembrane Helix	129	143	0.45
Non-Cytoplasmic	144	160	0.52
Transmembrane Helix	161	186	0.83
Cytoplasmic	187	193	0.47
Transmembrane Helix	194	218	0.78
Non-Cytoplasmic	219	242	0.58
Transmembrane Helix	243	264	0.82
Cytoplasmic	265	271	0.65
Transmembrane Helix	272	292	0.69
Non-Cytoplasmic	293	299	0.43
Transmembrane Helix	300	314	0.35
Cytoplasmic	315	332	0.64
Transmembrane Helix	333	354	0.78
Non-Cytoplasmic	355	368	0.81
Transmembrane Helix	369	391	0.87
Cytoplasmic	392	402	0.78
Transmembrane Helix	403	424	0.89
Non-Cytoplasmic	425	430	0.63
Transmembrane Helix	431	450	0.89
Cytoplasmic	451	463	0.66
Transmembrane Helix	464	492	0.82
Non-Cytoplasmic	493	667	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPSENHLL GPKTSFIDNR TSTSRPLHEI PSYQSLARRS STWKRANIPQ QKPSLVRRIN  60
   61 YYIPVLHWLP NYSLRNIIWD VLAGCSTACL SVPIALSFAQ TFLGVPPIYI LTGTAIGPIL 120
  121 YCLFTACPLI SIGPEAGMCL LIAENIHQRV LSKADVPQET AILVTGLIAF IAGIINLAAG 180
  181 LFRLGFLDAL VSPVLLRGCI LSISMIIMIN QGSVFFGFSG VKYKGSDFPI DKLMFLIRNM 240
  241 SKANIYTTIL SCITISLLIG CRNLKSKLSA KYPRIVSIPD AVIILLLGSF LSKKFDWHSN 300
  301 YGIAILGEIK TTILLPKLPL PEKNKLHFIT QSLQTGVMCS FLAFIDTVIA VKAISLQTNN 360
  361 LIRSNRELIS LGAANIGSSL FCGLPICGGY LRTKCNIMSG ARTQVATIAC SVLILLATFF 420
  421 IMPVFSTVPT CMLASMVVSL GVSLFADAAV EIFKLARIRV WWELGIIFSI ATCTMMFGLE 480
  481 TGIIFGLSIT VMQIIRHSTR SRIMFRSPTS NGTAEFILED AASTLSHRTN PSSTAVESAP 540
  541 RILVVRIPEP LFFANVSQLE DRLNRLEKYG HPRMHPGETP YRRIEDIEVV VFDMVGVSSI 600
  601 DSSALFAFQR ILKEYVEHQV EVHLVSLDPQ VLHIFEKHGL LDLIGGYDHV QDSIKKVDAL 660
  661 CDIELGV