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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PPN1_SCHPO
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSVITVAV LFVQSTWASF AFGNPMSMRN KAHTNDLVNS KGKPLVGRFL HITDMHPDIY  60
   61 YEKGSTVDHY CHSYDHNSDD TPLGKSKVGY LSPGPGYECD SSPALIDKTL EWLKEHQDDV 120
  121 LGGIDFILWT GDNSRHDNDN HFPRTQSEIL ASNEDLVNKM IEAFPDVPIV SAIGNNDIYP 180
  181 HNIMEAGPSS MTRQLAGAWD ALIPYEERHT FEKGSYYLCD VIPDKLAAIS INTLYLSNKN 240
  241 AAVDGCPDDN LDEPGSLFMR WFKIQLEAYR LKGMKVWLLG HIPPTRGQWY EDCYTSFTDL 300
  301 LYEFRDIIVG QLYGHMNINH FVFLEFDKLP VDTESYGIKS AQPKYVKSLI DAQYAELPTF 360
  361 PENLTEEFLN GTVGNYSLAT VGGSIIPEMF PTFRVYEYNI SDIANQLDDR EELTEITSFN 420
  421 WETLEEQSQS DYEIDKKKKK KKKNNKKKKK NKRKNIKPGP LGPAYVPSLF TPISFKQYFL 480
  481 NTSNYMDATK DTEISYELLY TSKDSPYNMP DLTVPEYMRL AKRIATCDKP EDPHQFKLQS 540
  541 GDQNTFRISK KKKPSICPIA YTYLWHAYIG SISDFED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle