YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1020.03
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTFNSSAR SCRAMPRFLP TLCSRLHEKS GFEIRNAVRM HSVGSHTHTH DHGSDKEMLE  60
   61 LVKALKKEGK SPELKLAWLG LYSNIGLAAA KGIGGVALQS SILVADAAHQ LGDTLSDLVT 120
  121 LATLKICSKK PTQKYPAGFG KWETIGTFTV SGLLVAVSVG IAHSSLSRLY TILFPYAGSE 180
  181 HTHIGHSHNP SQLLFEHPFM ALGLIFGSVV LKEWLFRKTR TVAQKTDSNI LLANAWHHRA 240
  241 DALTGMVSLL ALSGTYFLNA PWLDPFFGCL VSIVVFSAGF NSSKKAFLQL LDRAPSEELR 300
  301 IAVTDALLKG EKLPYKIVTI LGNAHAMHVI ISVPPSFTSQ QSSELAQKVE KTVLDAIPAL 360
  361 SSCIVTPLSS DSNQVHRWQH LNGSSGEHSH PSHEHTH

Type	Start	End	Confidence
Cytoplasmic	1	143	0.86
Transmembrane Helix	144	166	0.87
Non-Cytoplasmic	167	193	0.92
Transmembrane Helix	194	216	0.89
Cytoplasmic	217	235	0.97
Transmembrane Helix	236	257	0.87
Non-Cytoplasmic	258	262	0.73
Transmembrane Helix	263	283	0.87
Cytoplasmic	284	397	0.72