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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC887.12
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDVDNKQN AKRISRDEDE DEFAGESMVG RTLDNPFLGE DEFEDIFGSE SQYISSSGQN  60
   61 STNPFLADTR IENSPLGSES KANQLNKQGT NVNHIEIPLR DFNDPTQPES FLPPPKNTFT 120
  121 SRIKKIKNLF KKEKKQVKPE DLGPRQIILN DYSANHFLHN AVSTCKYSAF TFLPKFLKEQ 180
  181 FSKYANLFFL FTAVVQQIPG ITPVNRYTTI GPMLIVLSVS GIKEIMEDIK RKKQDQELNE 240
  241 SPCYVLQGTG FVEKQWKDVV VGDIVKIVSE TFFPADLVLL SSSEPEGLCY IETANLDGET 300
  301 NLKIKQALPE TAGLLKPVEL GQLSGEVKSE QPNNNLYTFD ATLKLLPSDR ELPLSPDQLL 360
  361 LRGAQLRNTP WVYGIVVFTG HESKLMKNTT ETPIKRTSVE KQVNSQILFL LCIFVFLCFA 420
  421 SSLGALIHRS VYGSALSYVK YTSNRAGMFF KGLLTFWILY SNLVPISLFV TFELVRYIQA 480
  481 QLISSDLDMY NEETDTPAAC RTSSLVEELG QVGYIFSDKT GTLTRNQMEF RQCTIAGVAY 540
  541 ADVIPEDRQF TSEDLDSDMY IYDFDTLKEN LKHSENASLI HQFLLVLSIC HTVIPEYDES 600
  601 TNSIKYQASS PDEGALVKGA ASIGYKFLAR KPHLVTVSIF GKDESYELLH ICEFNSTRKR 660
  661 MSIVFRCPDG KIRLYVKGAD TVIMERLASD NPYLQTTIHH LEDYATVGLR TLCIAMREVP 720
  721 EDEYQRWSTV FETAASSLVD RAQKLMDAAE EIEKDLILLG ATAIEDRLQD GVPDTISTLQ 780
  781 TAGIKIWVLT GDRQETAINI GMSCKLIDED MGLVIVNEET KEATAESVMA KLSSIYRNEA 840
  841 TTGNVESMAL VIDGVSLTYA LDFSLERRFF ELASLCRAVI CCRVSPLQKA LIVKMVKRNT 900
  901 GEVLLAIGDG ANDVPMIQAA HVGVGISGME GLQAVRSSDF SISQFCYLKK LLLVHGSWCY 960
  961 QRLSKLILYS FYKNIALYMT QFWYAFCNAF SGQVIFESWS ISLYNVLFTV LPPVVIGIFD1020
 1021 QFVSAGQLFQ YPQLYQLGQR SEFFNLKRFW SWITNGFYHS LLLFLCSIAV FYYDGPNKDG1080
 1081 LASGHWVWGT TLYAAILATV LGKAALISNH WTQYTVIATL GSFLLWIVFM PIYAVAAPAI1140
 1141 GFSKEYYGII PHLYGNLKFW ASLLVLPTIA LMRDFVWKYS SRMYYPEEYH YVQEIQKYNV1200
 1201 TDYRPRIVGF HKAIRKIRQM QRMRKQRGYA FSQGEEDQSR ILDAYDTTHT RGAYGEMR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle