YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC543.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.71
Transmembrane Helix	74	90	0.67
Non-Cytoplasmic	91	91	0.22
Transmembrane Helix	92	110	0.62
Cytoplasmic	111	119	0.52
Transmembrane Helix	120	141	0.89
Non-Cytoplasmic	142	148	0.46
Transmembrane Helix	149	167	0.58
Cytoplasmic	168	179	0.83
Transmembrane Helix	180	202	0.87
Non-Cytoplasmic	203	216	0.80
Transmembrane Helix	217	238	0.87
Cytoplasmic	239	268	0.92
Transmembrane Helix	269	290	0.93
Non-Cytoplasmic	291	311	0.91
Transmembrane Helix	312	333	0.89
Cytoplasmic	334	378	0.90
Transmembrane Helix	379	400	0.88
Non-Cytoplasmic	401	406	0.81
Transmembrane Helix	407	429	0.93
Cytoplasmic	430	449	0.95
Transmembrane Helix	450	468	0.97
Non-Cytoplasmic	469	474	0.77
Transmembrane Helix	475	493	0.88
Cytoplasmic	494	517	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKDKKFNY IFGSEIVNDV KKRLPYYKSD WIDACHYRVL PACLNIYFSN LLPELAFALD  60
   61 MFAKTNNSFG VNEVLLASVL GSVVFALLSS QPLCIVGVTG PITVFNYTVY DIMHDRGTPY 120
  121 FPFLCWICLW SMIFHFIIAI ANGVYFVKHI TKFSCEIFGL YVAFIYLEKG VQVLCDQLKY 180
  181 GLTNTFLSIT IALLFLMVGW LCDTVGKSSL FSYKVRILLL DYGLVASIIF FSGFQHIGKM 240
  241 REVSLAKLPT TKAFEPTLSR SWFIKFWKIP VGDVFLAIPF SIVLTILFYF DHNVSSVMAQ 300
  301 DPSFPLTKPA GFHWDFFLLG ITTGVSGILG IPAPNGLIPQ APMHTAALCV KRVDYDEDEI 360
  361 EKTHKEVIDR VVEQRASNFI QGLMTVGTMT GPLLLVLHQI PQCVLAGLFW VMGFSAIFGN 420
  421 GITQNVIWML SDRKVVSKNH TLNHCSSKRV VWLYTILQLI GFGATFAITQ VDKASIGFPI 480
  481 IILLLIPFRT YCMPKWFLEE DLEILDENVG IIAYQKV