YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBH6_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.97
Transmembrane Helix	28	51	0.92
Cytoplasmic	52	60	0.78
Transmembrane Helix	61	80	0.93
Non-Cytoplasmic	81	98	0.90
Transmembrane Helix	99	118	0.94
Cytoplasmic	119	215	0.96
Transmembrane Helix	216	236	0.96
Non-Cytoplasmic	237	252	0.82
Transmembrane Helix	253	276	0.85
Cytoplasmic	277	296	0.85
Transmembrane Helix	297	316	0.76
Non-Cytoplasmic	317	330	0.78
Transmembrane Helix	331	352	0.79
Cytoplasmic	353	377	0.86
Transmembrane Helix	378	400	0.78
Non-Cytoplasmic	401	411	0.69
Transmembrane Helix	412	433	0.89
Cytoplasmic	434	448	0.73
Transmembrane Helix	449	467	0.94
Non-Cytoplasmic	468	481	0.72
Transmembrane Helix	482	504	0.91
Cytoplasmic	505	511	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGMHMNSTG DNPIEIDFEN YANHMNKFLM AHIICMIIAY VFILPAGIVL AMAKSKAHIP  60
   61 VQIVYVILTL IGYIFAHISH HKASPENYYK GNIHRPVGRF FMWITFLIAI VGITTSILKK 120
  121 RMLKEYQPAA EAPGAMEDPE QALQRNSLDD GAPLLPREGN SSDEYLPPQS SRRDVSSEKP 180
  181 SIPSISFINI RSWRTIPKKW CVLQVLRYFH RILGHLWLYV GFFESCTGIV LLAGIFKGQH 240
  241 IFNGLAHWIK GAIFLWYGIL SFGEYLGAFS EYGWAWNVVP KQLSEKRFAK YVPTKEMVES 300
  301 FLLFAYGVSN VWLEHLGNTD GKWNHHDLQH ASLAFMLWWA GLCGILVESK VVHRLLNATL 360
  361 SATLGQRRSE DSEHSENGLP SYNVFPALTV FFTGIMMSAH DQTNHVSTVI HVLWGRLLAA 420
  421 AAIARICTYI MLYLKPPSSP WPTRPPTEII TSFCLICGGA MFMASSYDVV NKIRLNEMSP 480
  481 MLIMNISVAF TCIVMGLEVM FLILKGYASS R