YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC869.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	33	0.93
Cytoplasmic	34	52	0.89
Transmembrane Helix	53	72	0.85
Non-Cytoplasmic	73	87	0.72
Transmembrane Helix	88	108	0.90
Cytoplasmic	109	131	0.87
Transmembrane Helix	132	152	0.93
Non-Cytoplasmic	153	159	0.76
Transmembrane Helix	160	181	0.92
Cytoplasmic	182	192	0.84
Transmembrane Helix	193	215	0.86
Non-Cytoplasmic	216	251	0.93
Transmembrane Helix	252	273	0.90
Cytoplasmic	274	288	0.89
Transmembrane Helix	289	313	0.84
Non-Cytoplasmic	314	349	0.91
Transmembrane Helix	350	373	0.82
Cytoplasmic	374	394	0.88
Transmembrane Helix	395	416	0.92
Non-Cytoplasmic	417	424	0.67
Transmembrane Helix	425	446	0.94
Cytoplasmic	447	452	0.90
Transmembrane Helix	453	474	0.91
Non-Cytoplasmic	475	493	0.87
Transmembrane Helix	494	515	0.90
Cytoplasmic	516	555	0.97
Transmembrane Helix	556	577	0.92
Non-Cytoplasmic	578	586	0.87
Transmembrane Helix	587	609	0.91
Cytoplasmic	610	661	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETVLNQGY GYGIVIGLGF AFAIVMILVT YVLKRYVGEV QDSEHFTTAS RSVKTGLISS  60
   61 AVVSSWTWPG TLLTSAGMAY EYGVCGSMWY SFAFTVQITF FTVIALQVKR VAPGAHTIVE 120
  121 IVKARFGQAS HAVFLFYALG TNIIVSAMLL LGGSQAISAI TGMHVVAAGF LLPLGVWLYT 180
  181 VSGGLKSTFL SDWTHTVIVY IVILITLFVA YTSSVHIGSI DKMYDLLTEV SKTNPSTGYK 240
  241 GSYLTVTNRD AVFVGWNIVI GGFATVFCDP SYGQKAIAAK PISAMKGYFA GGLAWLIVPW 300
  301 AMGSAAALSC LALTNNPVSV TYPDPVSSKQ VSEGMPLLYG MTALMGKNGA AAGVLILFMA 360
  361 STSATSAELV AFSSVMTYDV YRNYFRPNAS GKELVRVTHV FVTIFAVCMG ALAVLFNYIG 420
  421 ITISWIITFI GIALGPAVFG ITLTLFWKKM NKYGMIIGCP MGSITGVVCW VGSCYKFSNG 480
  481 VVNKTTLNTP YANAVGNFTG LFSGLIYIVL ISYFFPNKSD DLNNLNEKFV LGDDATAEEI 540
  541 VDAETEKKQL DRSLRIGIFV SWIIFFILVI IVPLPMYGSK YIFSKLFFRG WIIVIIIWTL 600
  601 IAALYITFYP LYESRDTIVY LCKLAIGKAK APEPMNYVDA VEVEIESLSD DDKEKKANDF 660
  661 L