YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC21B10.09
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.97
Transmembrane Helix	52	73	0.84
Non-Cytoplasmic	74	91	0.72
Transmembrane Helix	92	106	0.54
Cytoplasmic	107	118	0.53
Transmembrane Helix	119	139	0.91
Non-Cytoplasmic	140	151	0.58
Transmembrane Helix	152	171	0.86
Cytoplasmic	172	191	0.46
Transmembrane Helix	192	211	0.88
Non-Cytoplasmic	212	232	0.55
Transmembrane Helix	233	252	0.85
Cytoplasmic	253	281	0.56
Transmembrane Helix	282	296	0.46
Non-Cytoplasmic	297	312	0.68
Transmembrane Helix	313	335	0.87
Cytoplasmic	336	346	0.77
Transmembrane Helix	347	366	0.93
Non-Cytoplasmic	367	374	0.70
Transmembrane Helix	375	399	0.87
Cytoplasmic	400	407	0.75
Transmembrane Helix	408	430	0.73
Non-Cytoplasmic	431	473	0.85
Transmembrane Helix	474	497	0.88
Cytoplasmic	498	519	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFKAHHRSI TRQDIELEDL ENAPASIASI ENDTLEANVG STPLTAKQKR NIYFLILLYL  60
   61 IQGVPMGLVR GSIPYFLKPN VSYSDLATYS LAAYPYSLKV LWSPIVDTYY CRSFGRRKTW 120
  121 VVPCMLLISS TLLLFSYNVD TWISKGSSYI NSFTTWSFLL VFVCATQDIA VDGWSLNMLN 180
  181 PEQLSYASTA QTVGLNTGFF LSFTILLVFT SPEFANTFIR SIPSNEGLIT LSGYIKFWAY 240
  241 FTFIASVLVC FWDESNHQEI ANISDMWKTI RAALSLKNMR QLLIVHTLGK VGFVANETLT 300
  301 LLKATEFGLS NEMLSLIILI NFPLGLALGV YTGRISNYRP LDIWLKGYWG RVVSILLNTI 360
  361 LVYMVSNWKH RFPVFFPIFL CYTLNASFST IQFVALGVFH SKISDPHIGG TYMTILNTLS 420
  421 NLGGSWPQYV MLRMADLLTV SSCSTAPHLT CSADAQKKEC QALGGTCLYK RDGYYLTSIV 480
  481 GIFLAISICV SLITPVVRRL TKAPISSWHI HSKIAETYT