YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC26H5.07c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	180	0.99
Transmembrane Helix	181	201	0.91
Cytoplasmic	202	214	0.83
Transmembrane Helix	215	236	0.94
Non-Cytoplasmic	237	261	0.91
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	290	0.79
Transmembrane Helix	291	310	0.95
Non-Cytoplasmic	311	317	0.84
Transmembrane Helix	318	342	0.90
Cytoplasmic	343	362	0.90
Transmembrane Helix	363	385	0.95
Non-Cytoplasmic	386	405	0.85
Transmembrane Helix	406	424	0.97
Cytoplasmic	425	505	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILKSALVG FICFLHFFIV NASDNKSLLT EDIMASQVCN GMFAKKGKTS EITLKIDSYT  60
   61 SDFGGAIRLL IFNWKDVNAI GMEDDDGEKH YICNYEDIEA GVCKDDDYGL YLINQTAPHD 120
  121 SIYSAAVDAE SMVSPLKYPV EQSGLYCVFT APLEGSSEAY KITVTWENYF GNLDATDYPH 180
  181 LFLNPILLAI NCLIGIWWSF IMFRYRHDLL QVQKYISGVV ALSIVCTMVS TGYFYFANSK 240
  241 GYTTGSKVFA FFLSLAQSAR QSYFGFLLLI VSLGYSIVVP SLGSLLRKCQ ILAGLQFVSS 300
  301 CFFLSSLFIS PSNKESLVIL FAAPVFLITL FAMFLWIVLA LNNTIRDLRI RKQTVKAQMY 360
  361 TRLWIVICFG IVAYASIVAA NAILIGIYGQ MNYYLKYWKL LWFLNYGYTD ILVLILMLTI 420
  421 LYLWRPTENN RRFAMSEQVA QDVDEFEMTS SLSNDSLHLH HERPTSPANP HIIHGSADEH 480
  481 QALFAVDDES DDDASTLATS KQKPA