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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SNX12_SCHPO
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQQHIFYFI TGGIFILWIL AHSFFVKIIY LWASGCLLWY CLETRTFENK NNLGTSEPFL  60
   61 VNPAIFQKRA RQLALSKLLL RQPLYPGIPE ISEEIESIIS HFMQKYIKVW SYQIIPEPTI 120
  121 SNSIESHLRK CLMVLLSRVD EIDLADVLVK TVLPLITKHL RLFVEAEQLV VGNKAVSFTD 180
  181 HSELSREVAA KYDHGRLHEA VLLSGNPMVA QKRYLRNWTT QVLSIILPNY YETSPLVLSL 240
  241 VTEVIINTTL LPLVSYISDP DFFNYLIIQA SGSIIQRRRK IRRLKRAIRK QSNHFQVGAR 300
  301 RLRLKDSQHS FEQYIHEIKK ISNISDARRL RSELMVQRRQ LEQTEAFDFE FKQYRERLQI 360
  361 AIITAEKRIS LLSGTPFQHK EAVLFEQVQS LLQILSDSAA VSCFLEFMER KNRSRYLHFW 420
  421 LVVEGLKESQ DDPLNAHMIA PFSDIVSDHT DFTAIVKSYF ESVDNPLDIP KPLTNTINKF 480
  481 VNQSKDNLNP DLWVEARNAM LMAQEHVFDI MQNSDYSEFV NSEIYYRFLA QDVVSDHKST 540
  541 NSSATFSRLE ELGENIPAIS KQPSYLSISS SSKSINSSPS PSIQLSVSSS ISRDKNLSPL 600
  601 DLELDDPTYS DEEEVLFAPP GDLQLSESID ELNNNIEELK AQLNAINTLI KKAELVADQK 660
  661 QLKSLTKNHQ EIEKAIHRKE RQRDQYMSQE EDSKLFNRSR VSIDSFKISK EENTPDFAVY 720
  721 TIRIERLENG HVRSGWMVAR RYREFAELHK QLKQTYPGVR SLKFPQKSII TSLNKNVLEY 780
  781 RRGALEEYLQ SLFRMPEVCD SKMLRMFLSQ QNITAPQMFN PKEVGKKWKQ LLEVLGFEVN 840
  841 NSFNASNVNT NSSFSGPISE FLVELFSPND DAKQQWLPKK TYISILEQLF GGALEKRIRL 900
  901 QLFQLFTPEK IYRKLREFRR GLEGKSNHDH SKDRRHSRAR KPAYADRNQL KAEAGILLAS 960
  961 MFPGYTPDIA VKRIFRILQN QSLNAHVIYT LLDEILLALK KHARSTNKAT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle