YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	str1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.99
Transmembrane Helix	91	111	0.92
Non-Cytoplasmic	112	118	0.80
Transmembrane Helix	119	141	0.85
Cytoplasmic	142	158	0.80
Transmembrane Helix	159	179	0.90
Non-Cytoplasmic	180	187	0.71
Transmembrane Helix	188	208	0.89
Cytoplasmic	209	216	0.80
Transmembrane Helix	217	235	0.93
Non-Cytoplasmic	236	250	0.81
Transmembrane Helix	251	272	0.93
Cytoplasmic	273	298	0.92
Transmembrane Helix	299	319	0.93
Non-Cytoplasmic	320	330	0.81
Transmembrane Helix	331	352	0.93
Cytoplasmic	353	365	0.79
Transmembrane Helix	366	385	0.92
Non-Cytoplasmic	386	402	0.90
Transmembrane Helix	403	425	0.89
Cytoplasmic	426	433	0.79
Transmembrane Helix	434	451	0.91
Non-Cytoplasmic	452	463	0.76
Transmembrane Helix	464	485	0.89
Cytoplasmic	486	493	0.73
Transmembrane Helix	494	518	0.86
Non-Cytoplasmic	519	572	0.89
Transmembrane Helix	573	593	0.91
Cytoplasmic	594	612	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLKSFSTTL DTLRRRFNDS SSEEDKLEKN IQDETSIKEV SLQDAKQSDE KGVEEKVFND  60
   61 ESFSIDVAPK PEDELSGIVK ARYLTEHSSR ISFYICYFSI FLLFFAISFQ AECYYSLTAY 120
  121 ATSAFAGHSL LSTIAVANNI ISAAIKPPLA RLSDVFGRLE AFLFSLLLYL VGLILMAAST 180
  181 NVQTYAGGSV LYNAGYTGVE LIMTIFMADT SSMANRSLVL GISYLPFVVT IWIGPRVAQE 240
  241 FYMHSTWRWG IAVWTILIPA CSIPFLAVYS YYQFRAWREG ALKGTLTINP VELFKKLDII 300
  301 GLILMTAGLA LVLLSISLAS YDTGKWSDAK FIVMIIIGGL CLIAFVLYEI FVASFPALPF 360
  361 RLMREPTIGA CCAMSFLFYI TFYCWDNYYY SFLQVVHYTS ITAAGYISYT YSFTSCATGF 420
  421 FLGILIRLTK RYKWYFVASI PVYILGQGLM IRYRGEQYNW GYQIMPQIIV GIGGGVIANL 480
  481 LTVAVQTVVS TENFAIVTAL VSTVTPIGGA VGSAISGAIW NSVMPKRLEK NLPSDLKDQA 540
  541 YTIFESLTVQ LSYTRGTDAR NAIILSYSEV QKILTSVATG FAGAMIFPVW FVANPRLSTV 600
  601 KTHIFDSKES KV