YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cox10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.96
Transmembrane Helix	95	112	0.89
Non-Cytoplasmic	113	119	0.71
Transmembrane Helix	120	139	0.87
Cytoplasmic	140	161	0.80
Transmembrane Helix	162	181	0.84
Non-Cytoplasmic	182	187	0.55
Transmembrane Helix	188	204	0.85
Cytoplasmic	205	211	0.69
Transmembrane Helix	212	233	0.87
Non-Cytoplasmic	234	238	0.72
Transmembrane Helix	239	262	0.77
Cytoplasmic	263	288	0.77
Transmembrane Helix	289	306	0.79
Non-Cytoplasmic	307	312	0.54
Transmembrane Helix	313	332	0.75
Cytoplasmic	333	343	0.73
Transmembrane Helix	344	365	0.88
Non-Cytoplasmic	366	387	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHILNKGSS KSCIYTRPCL KRFYHQHYEH TGKLSRTFFS PTHIKYNRLS TLDTSTSTAN  60
   61 AAPDPQVLTF LSKRMQAAPL YPKPSAFLEL GKPRLTVLVV LSTMSSYALA PYPGLSFNTL 120
  121 AWLTMGTALC SISANAFNQS MEPMLDCQMA RTRSRPIPRG AIRPEYAWLF ATLTGIAGTS 180
  181 MSFLVNPTVG WLGLGNIVLY MGIYTPLKRI SIVNTWVGSL VGAIPPLMGW AACSGGDLLS 240
  241 HPGGLITAAM LFAWQFPHFN AFSTMVKDDY KKCGYQMMAW KNPALNARVS LRYALAFLPL 300
  301 SYAYISTGLV GPWYAVPATG TNMFLIARAW KFYRNRNYQN ARSLFFASLL HLPLLFTLTL 360
  361 ACHMIKVWND SDSKNPVLGS EEDTLKY