YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	arh1
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRFIKRTY STQTSSPVVG IIGSGPAAFY TAHRLLRNDP NVKIDMFESR PVPFGLVRYG  60
   61 VAPDHPEVKH VEHKFSEIAE STQFRFLGNV NVGTDVSLRD LTKNYDCLVL AYGAAGDKRL 120
  121 GIPGEDLSGV YSAREVVGWY NSDPRNQNLE LDLSQVEDAV VIGHGNVSLD VARILLSNPA 180
  181 QLSPTDINPL FLKSLERSNL KRLHIVGRRN IFSVSFTIKE LRELFALSSA VFFAPSFNYS 240
  241 TKWMNETDAS GLDRPRKRLL KLLVSEIQKA VSEKRVAPYS KDKKCWNLEF GLTPVEILGH 300
  301 KGNVENVRFQ ITDSIRTDAE SKFTTIPAQL FIRSIGYKSM PLPGMKDVGV PFDDAKGIVK 360
  361 NVNGFVRPGI YTSGWVKHGP IGVIATTMMD AFATADTITK DWKSKKEFLK NSKLGWDGLK 420
  421 KNIKTPVIHW KDWKVIRNAE IERGLRHESL SEKFRSNEDM IKLIYPGKK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.49
Transmembrane Helix	10	28	0.46
Non-Cytoplasmic	29	469	0.98